Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00018 ATGGCTTCAGCTTGGATGATGAATTCAAACTTTGTTGATAACAATAATAAGAAGAAGAAAGTGTTGTTCATAATGGGAGCAACAGGAACTGGAAAATCGAAACTTTCCATCAACTTGGGGACTGAATTCCCATGTGAGATAATCAATTCAGACAAAATCCAAGTGTACAAAGGTCTTGACATTCTGACCAACAAGCTGCCACAATCCGAACAACGTGACATTCCTCATCACCTGCTAAGCATAATTGATGACCCTGATTATGATTTCACGGCAAATGATTTCTGCAAGCATGTTCATGATGCCCTTGACATCATAATCGAGAATGGGCACATTCCCATCATTGTTGGAGGCTCAAATTCATACCTTGAGGCACTGGTTGATGCTGAATTTCGGTCCAAATATGAATGCTGCTTCATTTGGCTTGATGTGTCTCTGCCTGTTCTGTTTGAATACTTAGACAAAAGGGTGGATGAGATGGTTGATGCTGGCGTTGTTGATGAGATTCAGCGTGAGGCTTTTGTTCCCAATAATGGTGATTACTCTCGTGGGATTAGAAGAGCCATTGGAGCTGTTGAGTTTCATAACTATTTTCACATCATTGAGAATGATCCAAGTGTTGATGAGGCTTATAAGAAACAGGTCTTTGATGATGCAATTAATAGCATGAAGATCAATACTCATAAGCTGGCTGAGAATCAAGTCCTGAAGATCAAACGCATGATCAATGTTCTTGGTTGGAAAATGACCAGAATTGATTCTACAGCTGTGTTTGAGGCTATTCTAAGTGGCCAAGATTACATGCATGTTTATCATCAGCTTGTTTTCAAACCAGCTTTGGAGGTGGCAGGGATGTTTCTCAACAATCACCGACCATGA 876 0.4041 MASAWMMNSNFVDNNNKKKKVLFIMGATGTGKSKLSINLGTEFPCEIINSDKIQVYKGLDILTNKLPQSEQRDIPHHLLSIIDDPDYDFTANDFCKHVHDALDIIIENGHIPIIVGGSNSYLEALVDAEFRSKYECCFIWLDVSLPVLFEYLDKRVDEMVDAGVVDEIQREAFVPNNGDYSRGIRRAIGAVEFHNYFHIIENDPSVDEAYKKQVFDDAINSMKINTHKLAENQVLKIKRMINVLGWKMTRIDSTAVFEAILSGQDYMHVYHQLVFKPALEVAGMFLNNHRP 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00018 291 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 145 248 - -
Stsc90627g00018 291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 16 211 IPR027417 -
Stsc90627g00018 291 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 18 281 IPR039657 -
Stsc90627g00018 291 Pfam IPP transferase 54 127 - -
Stsc90627g00018 291 Pfam IPP transferase 131 234 - -
Stsc90627g00018 291 Gene3D - 18 286 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00018 Stsc-Chr90627 88692 89567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00018 132 286 C2H2 Transcription Factor Family AT2G27760 31.285 4.12e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00018 K10760 - gmx:121173984 366.696