Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90627g00013 ATGCGGATGAGCTGTAATGGATGCAGGGTGCTGCGAAAGGGATGCAGCGAGAATTGCAGCATAAGGCCATGCCTACAATGGATAAAGAGCCCAGAGTCACAAGCCAATGCCACCGTCTTCCTCGCCAAGTTCTACGGCCGCGCCGGCCTCATGAACCTCGTCAACGCTGGTCCCGAACACCTTCGTCCAGGTACCCTTCTTCCTTCCTTCGAGTCCTTCTCCCTTTACATAAATGCAACCCATTCGAGCCCTTCTTTACTAACATTCCATCCACTTGATGCAGCCATTTTTCGATCCTTGCTCTACGAGGCATGCGGCAGGATAGTCAACCCAATCTATGGTTCCGTGGGTCTACTGTGGTCTGGCAGCTGGCAACTCTGCCAGGCGGCCGTTGAAGCTGTCTTGAAAGGCGCCCCCATCACTCCCATCACCTCCGAAGCGGCCGCTAACGGCCGGGGCCCACCTCTTAAGGCCTACGACATACGCCACGTCACCAAAGACGACTCTATCTCGGCCGCCTCTACTCGTCAGAACCCCAACCACAGACTCAAGACTCGATCCCGCAAGCGATCACACTCACAGTCACAGCCAAAGCCCAAACCCAACGCCGACAAGCTAACAACCACCACCAACAACCACGTTGAGGAGGTGGTGAACCATTCGGCGAGTCAGGATCACGAGTCGTCCCTGAGTCACCAGTCCGAGTTGGCCACCGTGGCGGAGGGAGGAGGAGACCACCAAGAGAGGGAGAGCGAGAGCATCGTGTCGGTCGAGAATAATACCGCCGAGGCTGCTACAGTTCTTTTCCGTGACGTGCCGGAGTCCAACCGGAAGCGCGTTGAGCGAACCGATGAGGACCGAACCGGACTTGGTCTAGACCTTACGCTTGGGTTGGAACCGGTTTCTTCGTCGTCACGTGCGGATCACGTGGTTCCTGTTAAGAAGAGAAGGTTCGAGTTGAAGGATTATGGTGTTGGATCGGGTGAGATGGGGCTTGGGCTAGAATGCCCGGCTTGA 1017 0.5634 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPGTLLPSFESFSLYINATHSSPSLLTFHPLDAAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVTKDDSISAASTRQNPNHRLKTRSRKRSHSQSQPKPKPNADKLTTTTNNHVEEVVNHSASQDHESSLSHQSELATVAEGGGDHQERESESIVSVENNTAEAATVLFRDVPESNRKRVERTDEDRTGLGLDLTLGLEPVSSSSRADHVVPVKKRRFELKDYGVGSGEMGLGLECPA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90627g00013 338 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 246 - -
Stsc90627g00013 338 MobiDBLite consensus disorder prediction 167 208 - -
Stsc90627g00013 338 Pfam Lateral organ boundaries (LOB) domain 95 134 IPR004883 -
Stsc90627g00013 338 Pfam Lateral organ boundaries (LOB) domain 4 63 IPR004883 -
Stsc90627g00013 338 MobiDBLite consensus disorder prediction 181 195 - -
Stsc90627g00013 338 PIRSF AS2 1 69 IPR017414 -
Stsc90627g00013 338 PIRSF AS2 91 325 IPR017414 -
Stsc90627g00013 338 ProSiteProfiles LOB domain profile. 3 140 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90627g00013 Stsc-Chr90627 61014 62388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90627g00013 1 318 AS2 family AT3G02550 53.145 1.13e-97 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc90627g00013 LOB 6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90627g00013 - - lja:Lj1g3v3317390.1 372.089