Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00071 ATGGGTAGTGATGGAAAAGGAGCATCATCATCATCAGTAGCCATAGGAATAGACCTTGGAACAACATACTCGTGTGTTGCAGTGTGGCGCCATGATCGAGTTGAGATCATAGCGAACGACCAAGGGAACAGAATCACACCTTCTTATGTTGCATTCACTGATACTCACAGAATGATCGGAGATGCTGCTAAGAATCAAATTGCTGCCAACCCTACCAACACTGTCTTTGACTCAAAGAGGTTAATTGGTAGGAAGTTTAGTGACCCTCACGTCCAGAATGACATCAAACTCTGGCCATTTCAAGTTACTACCAATGATGATGACATTCCAAGGATTGTTGTTGAGCACAAATGTGAGAAAAAGTCTTTCACTGCCGAGGAAATCTCTTCAATGATCTTAGTAAAGATGCGCGAAATAGCAGAGCAATTTCTTGGAACACAAGTAAAGGATGCAGTCATTACGGTGCCTGCTTATTTCAATGACTCTCAGCGCCAAGCTACCAAAGATGCCGGCCGCATCGCCGGCCTCAATGTACTGAGCATACTCAATGAGCCAAGTGCAGCAGCAATTGCTTACGGCCTTGACACTAATCATGTTCATGGAAACAGAACTATATTCGTCTTTGATTTCGGTGGTGGCACTTTGGATCTTACTCTTCTCACAATTGACAAGAAAGGAAACATAACCGTTAAGATCCATGGCGGAGACACGCATCTCGGTGGAGAGGATTTTGATGCTGCAATGGTTGAATTCTTTGCCACTGAGTTTCAGAGAAAGAAAAAGATTGATGATCTTAGAGATAACAAAAGAGCCATATGCAGGTTGAAGGTTGCTTGTGAGAGAGCAAAGAGGATTCTCTCTTCAACAACTGATGCCTCCATTGAGCTAGATTCTTTGCATAAGGGACATGATTTCTATACATCAATCACTCGTGCTAAGTTCGAGGAAATCAGCAAGAATCTCTTTGCGAGATGCATGGAGCTCGTGCATAAGTTTTTCGCAGATGCTAACCAGAAAAAGAGCAGTGTCGATGAGGTTGTCCTTGTAGGCGGCTCAACCAGGATTCTGAAATTGGAGCAGCTTTTGAAGGAGTTCTTTGATGGGAAGGATCTTTGCAAGAAGTGCATCAATGCGGACGAGGCGGTTGCATATGGTGCTGCAATCCATGCTGCAAAACTGAGTGGTGCTGCTGATAAGAAGATTCAAGATTTGAAGCTCTGGGAAGTTACTCCTCTGTCTCTTGGCGTGCAAATAGAAGGGGATTTAATGCAAGTTACAATTCCTAGGAACACCAGGGTTCCTACAAAGAAGAAATATGTGTTCACAACCACTATAGACTACCAAAAAAATCTCTGTTTCCCTATCTATGAGGGAGAGAGATTAATGGCAAGGGACAACAACTTGCTGGGAAGCTTTGTTCTGGAAATTCCTCCGACACGTCGCCGCGAAAAACCGAGGATTAATGTGTGCTTTGAGATAGATTCTAATGGTATCTTACATGTATCGGCAGAGGAAAAAGCAACGGGGAGTATCAAGAAGGTGTCTGTAGAGAGCAACAAAGGAAGATTGTCGAGGGAAGAAGTTGAGAGGATGGTGAAAGATGCTGAGAAGTACAAGGCTGAAGATAAAGAACACAAGAAGAAGGCTGAAGCAAGAAACAATGTGGCGAATCTTGCTTACAGTATGAGGAATTTTGTAGAACATGAAGGCATTGGTTCAGAGATATCTGCACAAGACAAGGAAAGAATCAACAACGCCGTGGATTATGCCTTGAAATGGCTTGATGAGAGTGATTCTGCAACGCTGGATGAGATTAACGAGAAAGGGAAATATCTTTCAAGTGTCTTTAATTCTGTTAATTTGAAGTTGAATCGAGGTGGAAGTCATGGCTCGTCATCCAGCTCCAAGAGTCACAAAATTGATGTAGACACTGCCGCTAGCGTGATTTCTGTTCTGTGTTCTTTACTCGAACTATTCCTCCAATAA 1986 0.431 MGSDGKGASSSSVAIGIDLGTTYSCVAVWRHDRVEIIANDQGNRITPSYVAFTDTHRMIGDAAKNQIAANPTNTVFDSKRLIGRKFSDPHVQNDIKLWPFQVTTNDDDIPRIVVEHKCEKKSFTAEEISSMILVKMREIAEQFLGTQVKDAVITVPAYFNDSQRQATKDAGRIAGLNVLSILNEPSAAAIAYGLDTNHVHGNRTIFVFDFGGGTLDLTLLTIDKKGNITVKIHGGDTHLGGEDFDAAMVEFFATEFQRKKKIDDLRDNKRAICRLKVACERAKRILSSTTDASIELDSLHKGHDFYTSITRAKFEEISKNLFARCMELVHKFFADANQKKSSVDEVVLVGGSTRILKLEQLLKEFFDGKDLCKKCINADEAVAYGAAIHAAKLSGAADKKIQDLKLWEVTPLSLGVQIEGDLMQVTIPRNTRVPTKKKYVFTTTIDYQKNLCFPIYEGERLMARDNNLLGSFVLEIPPTRRREKPRINVCFEIDSNGILHVSAEEKATGSIKKVSVESNKGRLSREEVERMVKDAEKYKAEDKEHKKKAEARNNVANLAYSMRNFVEHEGIGSEISAQDKERINNAVDYALKWLDESDSATLDEINEKGKYLSSVFNSVNLKLNRGGSHGSSSSSKSHKIDVDTAASVISVLCSLLELFLQ 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00071 661 Gene3D - 76 131 - -
Stsc90626g00071 661 Coils Coil 528 548 - -
Stsc90626g00071 661 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 398 551 IPR029047 -
Stsc90626g00071 661 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 550 627 IPR029048 -
Stsc90626g00071 661 ProSitePatterns Heat shock hsp70 proteins family signature 1. 17 24 IPR018181 -
Stsc90626g00071 661 PANTHER HEAT SHOCK PROTEIN 70KDA 14 587 IPR013126 GO:0005524|GO:0140662
Stsc90626g00071 661 FunFam Heat shock protein 70 15 204 - -
Stsc90626g00071 661 ProSitePatterns Heat shock hsp70 proteins family signature 2. 207 220 IPR018181 -
Stsc90626g00071 661 Gene3D - 552 624 IPR029048 -
Stsc90626g00071 661 Gene3D - 15 391 - -
Stsc90626g00071 661 Pfam Hsp70 protein 14 619 IPR013126 GO:0005524|GO:0140662
Stsc90626g00071 661 Gene3D - 197 372 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 63 71 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 343 359 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 484 500 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 151 171 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 376 396 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 403 422 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 213 223 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 13 26 - -
Stsc90626g00071 661 PRINTS 70kDa heat shock protein signature 41 53 - -
Stsc90626g00071 661 FunFam heat shock 70 kDa protein-like 76 131 - -
Stsc90626g00071 661 FunFam Heat shock 70 kDa protein 397 552 - -
Stsc90626g00071 661 SUPERFAMILY Actin-like ATPase domain 202 393 IPR043129 -
Stsc90626g00071 661 Gene3D Actin; Chain A, domain 4 240 324 - -
Stsc90626g00071 661 FunFam Heat shock 70 kDa 240 324 - -
Stsc90626g00071 661 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 400 554 IPR029047 -
Stsc90626g00071 661 SUPERFAMILY Actin-like ATPase domain 12 196 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00071 Stsc-Chr90626 364181 369423 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00071 5 626 Calmodulin-binding Proteins AT3G12580 60.193 0.0 762