Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00065 ATGGCCGCCGGCATGGATATGTCTCTCGATGACGTCATCAAGAGGTCCGCCGCCGAGTCCGCTGCTCGCCGCCGCCAAAGGCAACCTCTCTGGGGTCCCGGTCCCGACCGTCGCATCCCTAGTCGTCTCTCCGCCACAATGACACCCTACCCCGTCTCACAGAATGGTTTGCAGGTTGGAAGGCAAATGTTGCAAGGGAGATTAATTCCTGGTGTTGGAGTGGTTTTGGGTCATGGAGATGGAGCTGGAGCTGAACCTGACACTGAAACCAAACTCTACATTTCTAACTTGGATTATGGTGTTTCCAACGAAGATATTAAGCTTCTGTTTGCGGAAGAGGGCGAGTTAAAGAGATACTCCATCCATTATGACAAGAGTGGGAGATCAAAGGGGACGGCGGAAGTTGTCTTTATGAGGAAGTCTGATGCTCTGGCTGCCATGAAGAAATACAACAACATGAAACTTGATGGAAAACCATTGCAGATTGAGCTTGTTGGAACTACTGTGCTACCTGCTCCTGATGTTATGCCTCACTTGCAGAATAGCATATTGGGAAAACCAAATAACTTCTTTGCATGTGGACAAGGAAGGGCCGAAGGTAGAGGTTTCCAGAATGGCATTTTAGGCGACTATCATCAAAGGGACCTTAGTTACAGGATTGGAGGGAAGGTCCCTATTGGAAGGAGGGTGTCTTCTAGAGATCTTGATGATGATTTGGAGAGGTATAACCAACGTCCAAGAGGCGGTCCAACAGGCGGAGGTGGAGGAGGAGGCCGCAGAGAACCAAGGGGCCAAAATAAAAACGGAGGGTTATCCCGCAAAGATCTTGATGACGACTTGGAGCGGTATCGCATGGAGGCTATGCAACTAAAAAAGAAAATTCCCAACTGA 891 0.4927 MAAGMDMSLDDVIKRSAAESAARRRQRQPLWGPGPDRRIPSRLSATMTPYPVSQNGLQVGRQMLQGRLIPGVGVVLGHGDGAGAEPDTETKLYISNLDYGVSNEDIKLLFAEEGELKRYSIHYDKSGRSKGTAEVVFMRKSDALAAMKKYNNMKLDGKPLQIELVGTTVLPAPDVMPHLQNSILGKPNNFFACGQGRAEGRGFQNGILGDYHQRDLSYRIGGKVPIGRRVSSRDLDDDLERYNQRPRGGPTGGGGGGGRREPRGQNKNGGLSRKDLDDDLERYRMEAMQLKKKIPN 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00065 296 Coils Coil 273 296 - -
Stsc90626g00065 296 CDD RRM_THOC4 90 164 - -
Stsc90626g00065 296 MobiDBLite consensus disorder prediction 266 281 - -
Stsc90626g00065 296 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 288 - -
Stsc90626g00065 296 SMART rrm1_1 91 163 IPR000504 GO:0003723
Stsc90626g00065 296 MobiDBLite consensus disorder prediction 16 43 - -
Stsc90626g00065 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Stsc90626g00065 296 SUPERFAMILY RNA-binding domain, RBD 60 165 IPR035979 GO:0003676
Stsc90626g00065 296 MobiDBLite consensus disorder prediction 229 244 - -
Stsc90626g00065 296 Gene3D - 83 166 IPR012677 -
Stsc90626g00065 296 MobiDBLite consensus disorder prediction 229 281 - -
Stsc90626g00065 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00065 Stsc-Chr90626 327142 329434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00065 92 165 Eukaryotic Initiation Factors Gene Family AT2G23350 37.838 1.33e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00065 K12881 - gmx:100785926 213.772