Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00057 ATGGTCTTCCCTTCCCTTCCAATCTATCTTGATCCACCCAACTGGTCACAACAGGCTAATCAACCATTAGGAATTGGCTCTCAAAACCTACCAGTTCCACCAATTTTACAGCCACCACCTCCAACGATGATTACAGCCGTTGGAGGTGGTGGCTACCAGGGCTCTATCAGACCAGGATCAATGGCTGATAGAGCCAGACTGGCAAAGATACATCAACCAGATGTATCTCTCAAGTGTCCGAGATGCGAATCCACCAACACCAAGTTCTGTTACTACAACAACTACAGCCTCTCGCAGCCTCGCCACTTCTGCAAGACTTGCCGCCGGTACTGGACAAGAGGCGGCGCACTGAGGAATGTTCCGGTCGGCGGAGGATGCAGAAGGAACAAGAGAAGCAAAGGAACAACAACAAACACCACCACCAACACCAACAGATCAAAGTCGCCTTTGAATAAACCTGATCATCATCATCTGCACGGTGGTGCAGTTGGAGGTTCTAGCTCTGCAAGTGCAAACTCTTCTTCTAGTGGCCGGAATAACAGCAACAACAACAACGATGTGAATGTGATGAATCATATGCAAACTCCACCACCACCAACACAATTTCCATTCTTGCCAACAACTTTGCATCATCAACACTATAGTAGTAGTGGTGATCATGCATCATCACTTCTTTTTGGGCCAAACCCTCCTTCATCTTCTTTGGTGGTTAGAAATGGTGGTGGTGGTGATGTTGAGTTACAACAATGGAGGCTGCCCAATTTGCAACAGTTCCCTGGTTTCTTGAGTAATTTGGAAGCGGCGGCACCGCCACAAATTGGGTTGTTTCATCATCAATTTGATCATCAACAAGGTGGAGAAAATAATAATGGTGAATATGTGAGGGACCATCTTGGAGGTAGGTTTGTTCGTTCTAGTAATAATAGTAACAACAATAAGATCACAACAATGGCTGATGATGATGATTCTAGTGTTGTTGTTGTTGGTGGGGGTGGAATGATCAAAGTGGAAGAGAATAATAAGAATCATAGTCAAGGAGGGTTGAGTTTATTGTCTAAGAATAATAATAATAATAATGTTTTGGGTAGCAATGATCTATTTTGGAGTAGTGGTAATAGTAATAATGGTGGAAGTGGCAATATTAATCATCATCCATGGAATGAAGCTCCTACTACTTTCACTTCTCCAACAACTCACTTGTTGTGA 1206 0.437 MVFPSLPIYLDPPNWSQQANQPLGIGSQNLPVPPILQPPPPTMITAVGGGGYQGSIRPGSMADRARLAKIHQPDVSLKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSKGTTTNTTTNTNRSKSPLNKPDHHHLHGGAVGGSSSASANSSSSGRNNSNNNNDVNVMNHMQTPPPPTQFPFLPTTLHHQHYSSSGDHASSLLFGPNPPSSSLVVRNGGGGDVELQQWRLPNLQQFPGFLSNLEAAAPPQIGLFHHQFDHQQGGENNNGEYVRDHLGGRFVRSSNNSNNNKITTMADDDDSSVVVVGGGGMIKVEENNKNHSQGGLSLLSKNNNNNNVLGSNDLFWSSGNSNNGGSGNINHHPWNEAPTTFTSPTTHLL 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00057 401 Coils Coil 400 401 - -
Stsc90626g00057 401 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Stsc90626g00057 401 MobiDBLite consensus disorder prediction 205 227 - -
Stsc90626g00057 401 MobiDBLite consensus disorder prediction 378 401 - -
Stsc90626g00057 401 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 71 283 IPR045174 GO:0003700|GO:0006355
Stsc90626g00057 401 MobiDBLite consensus disorder prediction 165 195 - -
Stsc90626g00057 401 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Stsc90626g00057 401 MobiDBLite consensus disorder prediction 130 148 - -
Stsc90626g00057 401 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Stsc90626g00057 401 MobiDBLite consensus disorder prediction 118 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00057 Stsc-Chr90626 269189 271144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00057 1 133 C2C2-Dof Transcription Factor Family AT2G37590 52.830 6.13e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc90626g00057 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00057 - - adu:107486952 459.914