Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00046 ATGGCAACAAAGCATAAGGGTCGTGCCATAGGAATTGATCTTGGAACTACATACTCATGTGTTGCTGCATGGGAAGAGCAAAATAGTCGTGCTGAGATCATTGTTAATGATCAAGGCAACAGAACAACTCCTTCTTTTGTTGCCTTCACAGATACTCAAAGGTTGATCGGTGATGCTGCTAAGAATCAGGCTGCCTTCAACCCCTCCAACACCATCTTCGATGCTAAAAGATTGATTGGAAGAAAATACAAAGATCCTTCAATTGAGTGTGATCTTAAGTTGTGGCCATTCAAGGTTGTCTCTGGTGCTGATGACAAACCCATGATTAAGGTGAACTACAAAGGCAAGGAAAAGTGCCTTGCTGCTGAAGAAATCTCATCTATGATCCTCACCAAGATGAAGGAGATTGCAGAGGCCTACATGGAGTCTTCTGTGGAAAATGCAGTGATTACAGTCCCTGCTTATTTCAATGACTCGCAGCGAAAAGCCACCAAAGATGCTGGCATCATTGCCGGCCTTAATGTGATGAGAATCATCAACGAACCAACTGCTGCAGCCCTTGCATATGGCCTTCAAAAGAGAGCTAACTGTTCTGAGAAGCACAATATTTTCATCTTTGATCTTGGAGGTGGTACCTTTGATGTGTCTCTTGTCACAATTGAAGGTGATAACTTTGAAGTTAAGGCCACAGCCGGAGATACTCACCTCGGAGGGGAAGATTTTGATAACAGACTGGTGAGTCACTCGGTACAAGAGTTCAAAAGAAAGAACAGAATCGACATTACTGGGGATCCCAGAGCTCTGAGGAGGTTAAGAAAGGAGTGTGAAAGAGCTAAAAGAACACTTTCACATACTAATGAGACTACTATTGAGATAGATGCTTTGTTTCAAGGCACTGATTTTCGTTTATCTATAACTCGTGTGAAGTTCGAGGAACTCAATAAGGACTTGTTTGAGAAGTGCATGGAGATTGCTCAGAAGTGTCTTGATGATGCCAAGATGGCCAAGAGTGATGTCCATGATGTTGTCCTTGTTGGTTGA 1041 0.4284 MATKHKGRAIGIDLGTTYSCVAAWEEQNSRAEIIVNDQGNRTTPSFVAFTDTQRLIGDAAKNQAAFNPSNTIFDAKRLIGRKYKDPSIECDLKLWPFKVVSGADDKPMIKVNYKGKEKCLAAEEISSMILTKMKEIAEAYMESSVENAVITVPAYFNDSQRKATKDAGIIAGLNVMRIINEPTAAALAYGLQKRANCSEKHNIFIFDLGGGTFDVSLVTIEGDNFEVKATAGDTHLGGEDFDNRLVSHSVQEFKRKNRIDITGDPRALRRLRKECERAKRTLSHTNETTIEIDALFQGTDFRLSITRVKFEELNKDLFEKCMEIAQKCLDDAKMAKSDVHDVVLVG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00046 346 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc90626g00046 346 FunFam Heat shock protein 70 10 203 - -
Stsc90626g00046 346 Gene3D - 10 193 - -
Stsc90626g00046 346 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc90626g00046 346 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc90626g00046 346 FunFam Heat shock 70 kDa 237 320 - -
Stsc90626g00046 346 Pfam Hsp70 protein 9 346 IPR013126 GO:0005524|GO:0140662
Stsc90626g00046 346 Gene3D - 73 128 - -
Stsc90626g00046 346 Coils Coil 268 288 - -
Stsc90626g00046 346 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc90626g00046 346 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc90626g00046 346 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc90626g00046 346 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc90626g00046 346 PRINTS 70kDa heat shock protein signature 339 346 - -
Stsc90626g00046 346 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc90626g00046 346 PANTHER HEAT SHOCK PROTEIN 70KDA 9 346 IPR013126 GO:0005524|GO:0140662
Stsc90626g00046 346 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc90626g00046 346 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Stsc90626g00046 346 Gene3D - 194 346 - -
Stsc90626g00046 346 SUPERFAMILY Actin-like ATPase domain 200 346 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00046 Stsc-Chr90626 215606 216772 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00046 1 346 Calmodulin-binding Proteins AT3G12580 73.988 0.0 538