Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00042 ATGGCAACTAAGCATAAGGGTCGTGCCATAGGAATCGATCTTGGAACTACATACTCGTGTGTTGCAGCATGGGAAGAGCAAAATGGTCGTGCTGAGATTATTGTGAATGATCAAGGCAACAGAACAACTCCTTCTTTCGTTGCCTTCACTGATCAAAGATTGATTGGTGATGCTGCTAAGAATCAAGCTGCATCCAACCCTTCTAACACCATCTTTGATGCTAAAAGACTGATTGGAAGAAAATACAAAGATCCAGCAATTGAGTGTGACCTTAAGTTGTGGCCATTCAAGGTTGTATCTGGTGCTGATGACAAACCCATGATTAAGGTGAATTACAAAGGCAAGGAAAAGTGCCTTGCTGCTGAAGAAATCTCATCTATGATCCTCTCAAAGATGAAGGAGATTGCAGAGGCCTACTTGGACTTTTCTCTGAAAAATGCAGTTATTACAGTTCCTGCATATTTCAATGACTCACAGAGAAAAGCCACCAAAGATGCCGGCGTCATTGCTGGCCTTAATGTCATGAGAATCATTAATGAACCAACTGCTGCAGCTCTTGCATATGGCCTTCAAAAGAGAGCTAACTGTTCCGAGAAGCGAAATGTTTTCATATTTGATCTTGGTGGTGGTACCTTTGATGTGTCTCTTGTCACAATTGAAGATGGAGTCTTTGAAGTTAAGGCCACTGCCGGAGACACTCATCTAGGAGGAGAAGATTTCGATAACAGAATGGTGCGTCACTTTGTGCAAGAGTTCAAAAGAAAGAACAGAGTTGACATTAGTGGGGACCCTAGAGCACTGAGAAGGTTGAGAAATGGATGCGAGAAGGCAAAAAGGATACTTTCACATGCTAATGATACTACAATTGAGATAGACGCTTTGTTTCAAGGCATTGATTTTCGTTTTTCTATAACTCGTGCGAGGTTTGAAGATCTCAATAGGGACTTGTTTGAGAAATGCATGGAGATATCTCAGAATTGTCTTGATGATGCTAAGATGGAGAAAAGGGAAGTACATGATGTTGTCCTTGTTGGTGGATCTTCAAGGATTCCAAAAGTGCAGAGTTTATTGGAGAAATTTTTTCAAAGGTATAATCTTTGCAAGAGTATCAACCCGGATGAAGCTGTTGCTTATGGTGCTGCAATTCAAGCTGCTATGCTTAGTGAAAGTTATAGCATTGTGCCAAACATGGTACTAGTTGATGTTACTCCTCTGTCTCTTGGTATAGCCACTCATGGCGATTTAATGGGTGTAGTGATTCCAAGGAATACTGCCATTCCTGTAAAGATGGATGGTGTTTTTCAGACAATTGAAGATCATCAACCCACTGCTTCATTCCCGGTGTATGAAGGTGAAAGGACTAAAGCTGGTGAAAATAATTTGCTGGGTTTGTTTCATCTTTCAGGGCTTCCTCGTGTTCCTCGAGGCCACCCTATGAATGTTATCTTTGAACTTGATTATGATGGTATCTTAAAAGTTTGTGCTGTGGATGAAACAACAGGTAATAAGAACGGAATTACTATCACTAATGAGAAAGGAAGGCTATCAAGTGCTGAGATAAAGAGAATGATTGAGGAAGCTGCATTTTTCAAGGAAGAGGATAAGAAGTTCAAGAAGATGGTCAAAGCAAAGAATGCTTTGGATGATTATATTTACAGGATGGAGAAAGCTATGAAGGGTTTTGATGTAAGCTCCAAGCTTTCGCCTTCAGAAAAGGAAACAATAATGTCCAAATTCAGAAAGGGAAAAAGAATGCTTGAGAGTGAAGAGCATAATGAGGCTGCTGTGTTTGAGAACTATCTTAAAAGGTTACAGAAGATGTGTCAACCAATAGTGATCAACAAGGTCCGTGATTACAGTGATGAAGATACTGATTAG 1878 0.4036 MATKHKGRAIGIDLGTTYSCVAAWEEQNGRAEIIVNDQGNRTTPSFVAFTDQRLIGDAAKNQAASNPSNTIFDAKRLIGRKYKDPAIECDLKLWPFKVVSGADDKPMIKVNYKGKEKCLAAEEISSMILSKMKEIAEAYLDFSLKNAVITVPAYFNDSQRKATKDAGVIAGLNVMRIINEPTAAALAYGLQKRANCSEKRNVFIFDLGGGTFDVSLVTIEDGVFEVKATAGDTHLGGEDFDNRMVRHFVQEFKRKNRVDISGDPRALRRLRNGCEKAKRILSHANDTTIEIDALFQGIDFRFSITRARFEDLNRDLFEKCMEISQNCLDDAKMEKREVHDVVLVGGSSRIPKVQSLLEKFFQRYNLCKSINPDEAVAYGAAIQAAMLSESYSIVPNMVLVDVTPLSLGIATHGDLMGVVIPRNTAIPVKMDGVFQTIEDHQPTASFPVYEGERTKAGENNLLGLFHLSGLPRVPRGHPMNVIFELDYDGILKVCAVDETTGNKNGITITNEKGRLSSAEIKRMIEEAAFFKEEDKKFKKMVKAKNALDDYIYRMEKAMKGFDVSSKLSPSEKETIMSKFRKGKRMLESEEHNEAAVFENYLKRLQKMCQPIVINKVRDYSDEDTD 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00042 625 PANTHER HEAT SHOCK PROTEIN 70KDA 9 575 IPR013126 GO:0005524|GO:0140662
Stsc90626g00042 625 Pfam Hsp70 protein 9 612 IPR013126 GO:0005524|GO:0140662
Stsc90626g00042 625 Gene3D - 545 616 IPR029048 -
Stsc90626g00042 625 ProSitePatterns Heat shock hsp70 proteins family signature 3. 341 355 IPR018181 -
Stsc90626g00042 625 FunFam Heat shock protein 70 10 198 - -
Stsc90626g00042 625 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc90626g00042 625 Gene3D - 72 127 - -
Stsc90626g00042 625 FunFam Heat shock 70 kDa 236 319 - -
Stsc90626g00042 625 Gene3D - 10 385 - -
Stsc90626g00042 625 Gene3D Actin; Chain A, domain 4 236 319 - -
Stsc90626g00042 625 SUPERFAMILY Actin-like ATPase domain 199 387 IPR043129 -
Stsc90626g00042 625 ProSitePatterns Heat shock hsp70 proteins family signature 2. 204 217 IPR018181 -
Stsc90626g00042 625 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 613 IPR029048 -
Stsc90626g00042 625 Gene3D - 193 367 - -
Stsc90626g00042 625 SUPERFAMILY Actin-like ATPase domain 8 192 IPR043129 -
Stsc90626g00042 625 FunFam Heat shock 70 kDa protein 390 544 - -
Stsc90626g00042 625 FunFam heat shock 70 kDa protein-like 72 127 - -
Stsc90626g00042 625 FunFam Heat shock 70 kDa protein 199 266 - -
Stsc90626g00042 625 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 544 IPR029047 -
Stsc90626g00042 625 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 548 IPR029047 -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 370 390 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 59 67 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 396 415 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 147 167 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 338 354 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 210 220 - -
Stsc90626g00042 625 PRINTS 70kDa heat shock protein signature 476 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00042 Stsc-Chr90626 204744 206787 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00042 1 612 Calmodulin-binding Proteins AT3G12580 64.390 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00042 K03283 - gmx:102667578 793.112