Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00041 ATGGCCACAAAACATAAGGGTCATGCCATAGGGATAGATCTTGGTACAAAGTACTCATGTGTAGCTGTATGGGATGATCAAAATGGTGTTGCCAAGATCATTCACAATGAACAAGGCAACAGAACCACACCTTCTTGTGTTGCTTTCACTGACTCACACAGATTGGTTGGTGATGCTGCCAAAAATCAAGCAGCATTCAACCCAAAAAACACCATCTTTGATGCTAAGAGGCTGATTGGTAGAAAATTCAGTGATTCCATCATTCAGGATGACTTGAAGCTTTGGCCATTCAAAGTTGTATCTGGTGTTAATGACAAGCCTCTCATTTCTGTTGAGTACAAAGGTGAAGAAAAGCTTCTTGCTGCTGAGGAAATCTCATCTATGATCCTCACAAAGATGAAGGAAATTGCTGAGGCTTTTCTTGAATCTCCAGAGAAGAATGCTGTTATCACTGTCCCTGCTTATTTCAATGACTCTCAGAGAAAAGCTACCCAAGATGCTGGTGCCATTGCTGGCCTCAATGTCATGAAGATCATCAATGAACCTACTGCTGCAGCTCTAGCCTATGGCCTTCAGAAGAGAAGTAACTGTTCCGAAGAGCGAAATGTTTTCGTCTTTGATCTCGGTGGTGGTACTTTTGATGTGTCTCTTGTTACCATTAAGGGTGATGTCTATCAAGTTAAGGCCACTGCCGGAGACACTCAACTTGGAGGAGAGGATTTTGACAACAGAATGATAGATTACTTTGTGAAAGACTTCAATAAGAAGAACAATGTTGACATTAGTGAGAATCCAAGATCTCTTAGGAGGTTAAGAACTGCATGTGAGAGGGCTAAAATGAATCTTTCATTTGCTAAACAAACAACAATTGAGGTTGATTCTTTGTTCCAAGGCACTGATTTTTACTCATTGATAACTCGTTCAAGGTTTGAGGAACTCAACAAGGACCTGTTTCTGAAGTGTATGGACACTGTTGAGAAGTGTCTTGTTGATGCTAAAGTGGACAAGAACAATGTTCATGATGTTGTTCTTGTTGGTGGATCTTCAAGGATTCCAAAGCTTCAAGATCTTTTGCAGGAATTCTTTCTAGGAAAGGATCTTTGCAGAAGCATTAACCCGGATGAAGCTGTTGCTTATGGTGCTGCAGTTCAAGCTGCTTTATTGTCTGAAAGCATGAACACTGCTTTGGATTTGGTTCTGTTGGATGTTACTCCTTTGTCTCTTGGTATTTCCACAAAAGGAGATGTAATGTGTGTGTTCATTCCAAGAAATTCTGTTCTTCCTACTAAGCATGAAAAGCTCCTTGGTACTTTCGAAGATAACCAATCGACGGCGAAGATAGCTGTTTATGAAGGGGAGAGATCAAGGGCTAGTGATAACAACTTGCTGGGATTGTTCTGCTTAACTGATCTTGATCCTTCGCCGCGACGCCACCCTATAAAAGTATGCTTTGATTTGGATGAGAATGGTATCCTAAAAGTGTATGCTGAAGAATCAAAGACAGGGAAGAAGAAAGAGGTTACTATAGTGAATGATAAAAAAAGACTTACAGCACAAGAAATCAAGAGAATGATTCAAGAAGCTGAGATGTATAAGGAGGATGATGAAAAGTTTAAGGAGAATGTTGAGGCTAAGATTGCTTTGGAGGAATATGTTTATATGATGAGTGGTTTCATGGAAGATGGTAAGGTTAGTTCCAAGATTAAATCATCAGAAAAGAAGAATATAGAAGTTGCAATTGAAGAGGCTAGAGAACTTCTTGATGGTAACCAGAAGAAGGTTGAAACAGCTGAGTTTGAGAAGTGTCTTCAGAAGTTAAGGAGCATCTTTGATCCAATAATAATGTGA 1848 0.3983 MATKHKGHAIGIDLGTKYSCVAVWDDQNGVAKIIHNEQGNRTTPSCVAFTDSHRLVGDAAKNQAAFNPKNTIFDAKRLIGRKFSDSIIQDDLKLWPFKVVSGVNDKPLISVEYKGEEKLLAAEEISSMILTKMKEIAEAFLESPEKNAVITVPAYFNDSQRKATQDAGAIAGLNVMKIINEPTAAALAYGLQKRSNCSEERNVFVFDLGGGTFDVSLVTIKGDVYQVKATAGDTQLGGEDFDNRMIDYFVKDFNKKNNVDISENPRSLRRLRTACERAKMNLSFAKQTTIEVDSLFQGTDFYSLITRSRFEELNKDLFLKCMDTVEKCLVDAKVDKNNVHDVVLVGGSSRIPKLQDLLQEFFLGKDLCRSINPDEAVAYGAAVQAALLSESMNTALDLVLLDVTPLSLGISTKGDVMCVFIPRNSVLPTKHEKLLGTFEDNQSTAKIAVYEGERSRASDNNLLGLFCLTDLDPSPRRHPIKVCFDLDENGILKVYAEESKTGKKKEVTIVNDKKRLTAQEIKRMIQEAEMYKEDDEKFKENVEAKIALEEYVYMMSGFMEDGKVSSKIKSSEKKNIEVAIEEARELLDGNQKKVETAEFEKCLQKLRSIFDPIIM 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00041 615 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 615 IPR029048 -
Stsc90626g00041 615 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc90626g00041 615 Gene3D - 73 128 - -
Stsc90626g00041 615 FunFam Heat shock protein 70 10 205 - -
Stsc90626g00041 615 Gene3D - 546 615 IPR029048 -
Stsc90626g00041 615 Gene3D - 10 386 - -
Stsc90626g00041 615 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 397 416 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 477 493 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc90626g00041 615 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc90626g00041 615 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 397 549 IPR029047 -
Stsc90626g00041 615 Coils Coil 268 288 - -
Stsc90626g00041 615 FunFam Heat shock 70 kDa 237 320 - -
Stsc90626g00041 615 Coils Coil 573 600 - -
Stsc90626g00041 615 Coils Coil 521 541 - -
Stsc90626g00041 615 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc90626g00041 615 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc90626g00041 615 SUPERFAMILY Actin-like ATPase domain 199 389 IPR043129 -
Stsc90626g00041 615 Pfam Hsp70 protein 9 609 IPR013126 GO:0005524|GO:0140662
Stsc90626g00041 615 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc90626g00041 615 Gene3D - 194 368 - -
Stsc90626g00041 615 FunFam Heat shock 70 kDa protein 391 545 - -
Stsc90626g00041 615 PANTHER HEAT SHOCK PROTEIN 70KDA 9 581 IPR013126 GO:0005524|GO:0140662
Stsc90626g00041 615 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00041 Stsc-Chr90626 202325 204249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00041 1 614 Calmodulin-binding Proteins AT3G12580 64.773 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00041 K03283 - gmx:102667578 797.349