Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00032 ATGGCTGATAGTGCTGTTTCCTTCTTAATAGAGAAGTTGTCTCTGCTTCTTCTTGATGAAGCAGATCTTATTTCAGGTGTGGAGAACAAAATCATATATCTCAGAAATGAGTTTAAGTTTATAGACATCTTCCTAAAGAGTTGTGAGGGAAAACGCAGCAGCAAGATAGTGGAAGAAGTGGTAAAGCAGATCAGAGATGTTGCCTTTGAAGTTGAAGATTTGATGGACAACTATGTTGCCAACGATGCCGTACATAGAAGCAGAAATATATTGAGGAAGTTACTCTGCTGCATAAGCCATGTGATGATGCTTCATGAGGTAGATTCTGAGATAGAAAGGATCAAAGCAACTATCAATAATATCTATCAAAACAAGGATAGATACAGCATCGGAGAAGGAGAGTTCCAGCATGAAGATGACACCCAAGTGTTGCTCCGTCGAAGAAGGAGAGACGTAGAGGAAGAAGAAGTGGTTGGATTGCTCAACGACTCGAGCTTTGTCCTTAAACAGCTCATGGAAACAGGTTCACCTCGCGGCGTTGTTTCTATAACCGGTATGGGGGGATTGGGAAAGACTACCCTTGCTCGAAAGATCTATAGTAAGAAGGAAGTTGGAGAAGCTTTTCCTTTTCGCGCATGGGGTTATGTGTCCAATGACTATAGAGTTGAGGAGCTTCTGCTGAGCCTTCTCAAATGCTTGCTATCCACCTCTGAATACAATGGTTTATCTGAGAAGAGGCATGATTATGATGGAATGAAAGAGAAAGTGAAAGAGAGTTTGAGGGGGAAGAAGTATCTAGTGGTGTTGGATGACATTTGGAAAATACAGGTGTGGGATGATTTGCAAGGAGTCTTTCCAAATGACAACAATGGCAGCCGAATACTGATAACTAGTCGCAATAGAGACGTGGCTTCCTATGCCGGTACAATGCCTTACTGTGATCTTTCCTTCTTGAGTGAAGAAGAAAGTTGGCAGCTCTTTTGTAAGAAGGTGTTTCTAGCACAGGATTGCCCCTCTAATCTAAGAGATTTAGGTAAGGAGTTAGTCGCGAGTTGTGAAGGCTTGCCACTCGCAATCATAGTGTTAGCAGGACTTGCAAAGAAAGGCATATCACAAAGAGAATGGTTGAAAATCAAAGGTAATGTGAATCAACATTGTGATGATGAAGATGGGATTAGAGTTGTGGATATTCTAAAACTTAGCTATGATAGCTTGCCTCAAAGATTGAAGCCTTGCTTTTTGTATCTTGGAATCTTCCCTGAAGACTATGAGATCCTTGCCAGAGAACTAATCAAGCTGTGGATAGCTGAAGGGTTCATACAAATAGAAGAAACCGGAACAACGGATGTGCCGGAACCAGAAGATGTTGCAGATCACTATTTAGATGAGTTGGTGGATCGTAGCCTGGTGCAAGTGGCAAGCAGAAGGAGTGATGGAGGTGTGAAAACATGTCGAATCCACGACCATCTCCGTGATCTCTGCATATCAGAGGGTAAGGCCGATAAGTTCTTGGAGGTTCGCCAAGGATCAAACATCCCTGAATCTTCTGGGATAAGTAATTCTCGTAAGTTGTCCATACACTGCACAACAGAGTTTTCTTGGTCTTCAAGAAACAAAGGTAATCAATCTTGCACTCGCTCTTTGTTTTTCTTTGCTCAAGGCAAGAGGGTCCAAAACCTTACACTGAAAGATTTCAAGTTGGCTCGCATATTGTATCTTACAAATGTATTAGGATGGAGAATAGTTGTTCCCATACCTAGTGATTTGAAAACCATGATCCATCTAAGGTACTTGAGAATAGATTCTTGGATTAAAAGCATCCCAGATTTTATATTCAACCTCTGCAACCTAGAAGTAATAGAGTTATGGAGTAAAAGCATACTAACCTTCTCCAGTAAACTATGGAAGCTTAAGAGGCTAAGACATTTGCGTGTGTGGCCGTTTAGACTTGGATCAGAAGTAATGTCGGGCGCAAATGGTAAAACAATGCCGAATCTGCAAACCCTCTTGCTGATTCATATTGATCCACAATTGGCATCTATGATAAGAAATGGAAGCTTTCCCAACCTGAAGAAACTTGGTTTGGTACAATGGGGCGAAGATAACGGAGACAGATATTCGGTGCGAGAACTACAATGCTTGCAGTGCCTAAAGAGTCTCGGCACACTTAGAATATCTGGCACATCAAAGCTTCCATCAGAGGCAAGTGTTTTTCCCCCAAATCTTACCAAGGTTACTTTGAGTCGTGTCAGACGATTCGACTCGAGTTGCATGAGAGTTCTTGGACAGCTTCCTAAACTCCAAATCTTGAAGATAAGGGGACCTGAAATTGTTAGAGGATCTCATGACATTCATTTTGCCATTGAAGAGTTCCCATGCCTTCAAGTGTTCAAGATGATTTGGATGTCTCATGTGGTAACTTGGACATTACACAGAGGAGCATTGCCTAGTCTTCAACATTTGGTCATAGACTGCTCTTATTTGAAGCAGCTTCCTCAAGAACTTTGGTCCTTGGCTACTTTACAACAAGTGCATGTTATTCAACCACATTCTGAGTTGAGAGACATCCTCCAACATGTTGTGCTCGACAATGGCTGTAAACTCATTATCTCTTGA 2616 0.4182 MADSAVSFLIEKLSLLLLDEADLISGVENKIIYLRNEFKFIDIFLKSCEGKRSSKIVEEVVKQIRDVAFEVEDLMDNYVANDAVHRSRNILRKLLCCISHVMMLHEVDSEIERIKATINNIYQNKDRYSIGEGEFQHEDDTQVLLRRRRRDVEEEEVVGLLNDSSFVLKQLMETGSPRGVVSITGMGGLGKTTLARKIYSKKEVGEAFPFRAWGYVSNDYRVEELLLSLLKCLLSTSEYNGLSEKRHDYDGMKEKVKESLRGKKYLVVLDDIWKIQVWDDLQGVFPNDNNGSRILITSRNRDVASYAGTMPYCDLSFLSEEESWQLFCKKVFLAQDCPSNLRDLGKELVASCEGLPLAIIVLAGLAKKGISQREWLKIKGNVNQHCDDEDGIRVVDILKLSYDSLPQRLKPCFLYLGIFPEDYEILARELIKLWIAEGFIQIEETGTTDVPEPEDVADHYLDELVDRSLVQVASRRSDGGVKTCRIHDHLRDLCISEGKADKFLEVRQGSNIPESSGISNSRKLSIHCTTEFSWSSRNKGNQSCTRSLFFFAQGKRVQNLTLKDFKLARILYLTNVLGWRIVVPIPSDLKTMIHLRYLRIDSWIKSIPDFIFNLCNLEVIELWSKSILTFSSKLWKLKRLRHLRVWPFRLGSEVMSGANGKTMPNLQTLLLIHIDPQLASMIRNGSFPNLKKLGLVQWGEDNGDRYSVRELQCLQCLKSLGTLRISGTSKLPSEASVFPPNLTKVTLSRVRRFDSSCMRVLGQLPKLQILKIRGPEIVRGSHDIHFAIEEFPCLQVFKMIWMSHVVTWTLHRGALPSLQHLVIDCSYLKQLPQELWSLATLQQVHVIQPHSELRDILQHVVLDNGCKLIIS 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00032 871 CDD RX-CC_like 2 121 IPR038005 -
Stsc90626g00032 871 Pfam Rx N-terminal domain 5 85 IPR041118 -
Stsc90626g00032 871 FunFam Probable disease resistance protein At1g61300 140 310 - -
Stsc90626g00032 871 Gene3D - 407 496 IPR036388 -
Stsc90626g00032 871 PRINTS Disease resistance protein signature 180 195 - -
Stsc90626g00032 871 PRINTS Disease resistance protein signature 259 273 - -
Stsc90626g00032 871 PRINTS Disease resistance protein signature 352 366 - -
Stsc90626g00032 871 PRINTS Disease resistance protein signature 715 731 - -
Stsc90626g00032 871 Gene3D - 141 310 IPR027417 -
Stsc90626g00032 871 Gene3D - 4 108 - -
Stsc90626g00032 871 SUPERFAMILY L domain-like 513 845 - -
Stsc90626g00032 871 Pfam NB-ARC domain 167 403 IPR002182 GO:0043531
Stsc90626g00032 871 PANTHER DISEASE RESISTANCE PROTEIN RP 55 815 IPR044974 GO:0006952
Stsc90626g00032 871 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 416 IPR027417 -
Stsc90626g00032 871 Gene3D Ribonuclease Inhibitor 540 866 IPR032675 -
Stsc90626g00032 871 Gene3D - 317 406 IPR042197 -
Stsc90626g00032 871 FunFam Probable disease resistance protein At1g63360 402 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00032 Stsc-Chr90626 155963 158653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00032 181 493 WRKY Transcription Factor Family AT5G45050 26.250 1.81e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00032 - - gmx:100801950 780.785