Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00022 ATGGATGAACAAACTAAGTCGTCGTCATCATCCTTATCATCATTTCCTAATAATATACTGTTAGAATGCCGAATATGTCACAATGAAGATGAAGAGTCACACATGGAGGCACCATGTTCATGTTCTGGCACCTTGAAGTATGCACATAGAAATTGTGTTCAGAGATGGTGCAATGAGAAAGGGGATACTACCTGTGAGATTTGCCTACAGCAATTTACACCAGGCTACACTGCACCCCCACCACCACCTACTTCCTTATTCCATTATGGCGGATCTCCGACAAATTTCGGATGGAACTATTGGGAGATTTCAAGGACAGAACTTCACAATAACAATAATCAATTTGCAGCAAGAGAACTATTTGGTGCTGATCATGATCTAGACCCTGACATTAGATATTCAGCACCCTCCTCTACAAGGTCCATGATATGCTGCCGCATAGTTGCCACTATTTTTCTTGTTCTTGTTATTTTAAGGCATACACTACAAGTTATACTGATACTCAGTGAAACAGAAGAGTATTCATTAGCAGTGGTTATGGTATTACTGTTGGGAATCTTTGGGATATTGATATCTGTGCATATGATGGTCAAAGCTAACTACTATAGTCCAAGAACTTCAATACCAGATTCATCATTCCCCTATTTCATTACTTGA 657 0.3942 MDEQTKSSSSSLSSFPNNILLECRICHNEDEESHMEAPCSCSGTLKYAHRNCVQRWCNEKGDTTCEICLQQFTPGYTAPPPPPTSLFHYGGSPTNFGWNYWEISRTELHNNNNQFAARELFGADHDLDPDIRYSAPSSTRSMICCRIVATIFLVLVILRHTLQVILILSETEEYSLAVVMVLLLGIFGILISVHMMVKANYYSPRTSIPDSSFPYFIT 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00022 218 SUPERFAMILY RING/U-box 21 73 - -
Stsc90626g00022 218 CDD RING_CH-C4HC3_MARCH 23 68 - -
Stsc90626g00022 218 FunFam Zinc finger family protein 12 78 - -
Stsc90626g00022 218 ProSiteProfiles Zinc finger RING-CH-type profile. 15 75 IPR011016 GO:0008270
Stsc90626g00022 218 Pfam RING-variant domain 23 68 IPR011016 GO:0008270
Stsc90626g00022 218 SMART ringv_2 22 69 IPR011016 GO:0008270
Stsc90626g00022 218 Pfam Protein of unknown function (DUF3675) 74 199 IPR022143 -
Stsc90626g00022 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 77 IPR013083 -
Stsc90626g00022 218 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 200 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00022 Stsc-Chr90626 111937 113553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00022 22 68 C3H Transcription Factor Family AT2G37950 50.000 3.32e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00022 - - gmx:100784696 221.476