Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00021 ATGGCGTTGCAGAACATTGGTGCCTCAAATAGGGATGATGCCTTCTACAGGTATAAGATGCCCAAAATGATAACCAAGATTGAGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGCGTTGGCTAGGCCAGCATCTTACACCACCAAGTATTTCGGTTGTGAGCTTGGAGCGCAATCCAAATTCGATGAGAAAACTGGCACTTCTCATGTTAACGGAGCACATGATACTGCAAAACTTGCAAGCCTGCTTGAGAACTTCATTAAGAAATATGTTCAATGCTACGGTTGTGGAAATCCCGAAACTGAGATTCTGATTACGAAGAGTCAAATGATCCAGCTGAAGTGTGCTGCTTGCGGTTTTGTGTCTGATGTGGACATGAGGGACAAGCTTACTACCTTCATCGTCAAGAACCCTCCCGAAGCAAAGAAAGGATCAAAAGACAAGAAGGCCATGAGGAGGGCTGAGAAGGAGAGGATGAAGGAAGGCGAAATGGCTGATGAGGAACAGAAGAAACTGAAGAAAGAGGTTAAGAAGAAAGGCACGTCATCATCAAAGGATGTCACTGTAAAATCTAATAAGAAGAAAGCTGGTGGCTCTGATGAAGAACGTGTATCTCCTACACACAGTCAAATTGATGAGAAAGAGGAGGCACACGACGAAGATGATGATGATGATGTTCAGTGGCAAACAGATACATCTGTTGATGCTGCCCGTCAACGAATTCAGGAACAGTTAAGTGCTGTGACTGCTGATATGGTCATGCTCTCAACAAATGAACCAGAGAAGAAGAAGAAGGCAGAAAGCAANNNNNNNNNNGTAGCACTGTGA 861 0.4088 MALQNIGASNRDDAFYRYKMPKMITKIEGXXXXXXXXXXXXXXXXXXXKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLASLLENFIKKYVQCYGCGNPETEILITKSQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEAKKGSKDKKAMRRAEKERMKEGEMADEEQKKLKKEVKKKGTSSSKDVTVKSNKKKAGGSDEERVSPTHSQIDEKEEAHDEDDDDDVQWQTDTSVDAARQRIQEQLSAVTADMVMLSTNEPEKKKKAESXXXXVAL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00021 286 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 274 IPR045196 GO:0003743|GO:0006413
Stsc90626g00021 286 Coils Coil 162 182 - -
Stsc90626g00021 286 FunFam Eukaryotic translation initiation factor 5 1 107 - -
Stsc90626g00021 286 MobiDBLite consensus disorder prediction 148 249 - -
Stsc90626g00021 286 SMART eIF2Bneu4 15 132 IPR002735 GO:0003743|GO:0006413
Stsc90626g00021 286 Coils Coil 27 29 - -
Stsc90626g00021 286 FunFam Eukaryotic translation initiation factor 5 108 148 - -
Stsc90626g00021 286 MobiDBLite consensus disorder prediction 151 226 - -
Stsc90626g00021 286 Gene3D - 2 107 - -
Stsc90626g00021 286 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 104 IPR016189 GO:0003743|GO:0006413
Stsc90626g00021 286 Gene3D - 108 148 - -
Stsc90626g00021 286 Pfam Domain found in IF2B/IF5 11 130 IPR002735 GO:0003743|GO:0006413
Stsc90626g00021 286 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 101 136 IPR016190 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00021 Stsc-Chr90626 108890 111711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00021 1 278 Eukaryotic Initiation Factors Gene Family AT1G36730 68.705 6.09e-119 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00021 K03262 - gmx:100796346 407.142