LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90626g00005	ATGGCTTCTCTGCTTGTTATGCTCCTCCCTCCTAACCTTATTCTTCTATACTTAATGATCCTCTTGATAATGATTCAGATTCCTCCATACTTAAGCTCCAATGATGATAACTTTACAAGTTGTGCTAGTACTACCTATGATTGTGGGGCGATTAACAACATTGGTTTTCCGTTCTGGGGAGGAAATCGTCCAAAGTGGTGTGGCCACCCTCTTCTACAACTCAACTGTGATGGTGATCATGGCTTCACTACTTACATAACCATCAAGGGCATGAGATACCAGGTTTTGGAAGCATACCCGGTTAACCAAACCATGAAGATAGCAAGAGTGGACTACTTTGAAGGTCTATGCCCTTCAAAACCAGTGAACACAACTCTTGACTTTGATCTCTTTGAATATGGGCCTGGAAATAAGAATCTTACCCTCTTCTATCATTGTTCTTCCAATAATGGTTTCTCCAATTTTCTTAATTGTTTCTCAAATGGGACTTCCAGTGAACACTTTTATGCTCAGCCTCAGGATCTAGGTGCTCCTCCTTCTGCTTTGATTTGCACAACAGAGGTGTTTGTTCCATTATTCCTGCAGCAATTTGATGAAGGGAACTTGTCATGGAACAAAATAGAAGGTGCTATCCAAAATGGATTCATGGTGAGATGGATAGGAGGTGTAGCAGAATGTGTGAAGTGTATGAACTCAGGTGGAGCCTGTGGCTATGACTGGAATTCAAATCAATCAAGATGTTATTGCAAAGATCAGTCTAATTCTTCATATTTGGGTGATAGAATCATCAAAACTTGTGATCCTTTTGCTTTGGCACCACCTAATCAAGATGATCATGGACCTTCATCAGATAAAAGTTCTAGCAAAGCTCCTGCTATAGCAGGTGCTACTGCAGGAGCTGTAGTCCTTGTTGTCCTTCTTTTAGGCACATTTTTTGTTGTAAGAAAAAGGAGAAGAAATGCTGAAAGATCAAGAAGCAACAAGGATAGTTTGCCTGTGAGTGGAGTCCCTCTTACATCTTCAACTACAACAAGTAGTAGTAACACGTCTCAGAGTGCTTCTTCTTACCCTTCCTCCAAGTCTGAGTCTGTTGTAGGGCCAAAGAGTTACTACTATGGTGTTCATGTGTTTGACTATGCTGAACTTGAGGAAGCAACCAAGAATTTTGACCCTTCTAGAGAAATTGGTGAGGGAGGCTTTGGCACTGTTTACAAAGGTATACTTCAAGATGGGCGCGTAGTTGCAGTGAAACGTCACTATGAAAGCCATTTAAAGCGTGTTGAGCAATACATGAATGAAGTTGAGATTCTGGCACACATGAGGCACAAGAATTTGGTCACTCTCTTTGGCTGTACTTCAAGACACAGCAGAGAACTCATCCTTGTTTATGAGTTTATACCGAACGGAACACTGGCCGATCACCTCCATGGAAGCCTTGCAAATTCCACCTTACTTCCTTGGAATGTAAGATACAACATTGCACTCGAAACAGCTGAGGCGCTGTCCTTCCTCCATTCTAAGAAAGTCATACACAGAGATGTTAAGTCCAACAACATTCTGCTTACAGAGAATTTTCAAGTTAAGGTTGCTGATTTTGGACTATCAAGGTTGTTTCCTAAATTTGTTACTCATGTCTCAACAGCACCGCAAGGAACACCGGGCTATGTTGATCCTGAGTATTACCAGAACTATCAATTAACCGATAAGAGTGATGTTTATAGCTTTGGAGTGGTGTTGGTTGAGCTTATATCTTCATTGCAAGCAGTGGACATAACCCGGCAGAGGAATGAAGTTAACTTGGCTAGTCTTGCAGTGAATAGGATACAGAACCAAGAACTGCATGAAATGGTTGATCCAGATCTTGGATTTGAGAGGGACAATGATGTAAGGAGGATGGTAACTGCAGTGGCTGAATTGGCATTCAGGTGCTTGCAGCAGCAGAGAGAGATGAGGCCCTCCATGGATGAGGTTCTTGAGGTCTTGAGAGGGGTAAAGAGTGATGAGTTTGGTGCAATACAGAAAAACTCATCAGAATCAGTGGTGGATTTTAATCATAGTAAGACAGAGGAGGCTATACTTTTGAAGAAGGTTCCATCACCATTTTCACCAGATTCTGTTGCTGATAAATGGGTTAGCAGCTCTTCTACATCTAGCATTTCTTAG	2163	0.4175	MASLLVMLLPPNLILLYLMILLIMIQIPPYLSSNDDNFTSCASTTYDCGAINNIGFPFWGGNRPKWCGHPLLQLNCDGDHGFTTYITIKGMRYQVLEAYPVNQTMKIARVDYFEGLCPSKPVNTTLDFDLFEYGPGNKNLTLFYHCSSNNGFSNFLNCFSNGTSSEHFYAQPQDLGAPPSALICTTEVFVPLFLQQFDEGNLSWNKIEGAIQNGFMVRWIGGVAECVKCMNSGGACGYDWNSNQSRCYCKDQSNSSYLGDRIIKTCDPFALAPPNQDDHGPSSDKSSSKAPAIAGATAGAVVLVVLLLGTFFVVRKRRRNAERSRSNKDSLPVSGVPLTSSTTTSSSNTSQSASSYPSSKSESVVGPKSYYYGVHVFDYAELEEATKNFDPSREIGEGGFGTVYKGILQDGRVVAVKRHYESHLKRVEQYMNEVEILAHMRHKNLVTLFGCTSRHSRELILVYEFIPNGTLADHLHGSLANSTLLPWNVRYNIALETAEALSFLHSKKVIHRDVKSNNILLTENFQVKVADFGLSRLFPKFVTHVSTAPQGTPGYVDPEYYQNYQLTDKSDVYSFGVVLVELISSLQAVDITRQRNEVNLASLAVNRIQNQELHEMVDPDLGFERDNDVRRMVTAVAELAFRCLQQQREMRPSMDEVLEVLRGVKSDEFGAIQKNSSESVVDFNHSKTEEAILLKKVPSPFSPDSVADKWVSSSSTSSIS	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90626g00005	720	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	368	465	-	-
	Stsc90626g00005	720	MobiDBLite	consensus disorder prediction	706	720	-	-
	Stsc90626g00005	720	Pfam	Wall-associated receptor kinase C-terminal	179	252	IPR032872	-
	Stsc90626g00005	720	Gene3D	Transferase(Phosphotransferase) domain 1	466	689	-	-
	Stsc90626g00005	720	Pfam	Protein kinase domain	392	659	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90626g00005	720	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	509	521	IPR008271	GO:0004672\|GO:0006468
	Stsc90626g00005	720	MobiDBLite	consensus disorder prediction	698	720	-	-
	Stsc90626g00005	720	MobiDBLite	consensus disorder prediction	327	365	-	-
	Stsc90626g00005	720	ProSitePatterns	Protein kinases ATP-binding region signature.	395	417	IPR017441	GO:0005524
	Stsc90626g00005	720	FunFam	Wall-associated receptor kinase-like 20	466	674	-	-
	Stsc90626g00005	720	CDD	STKc_IRAK	395	661	-	-
	Stsc90626g00005	720	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	19	716	IPR044652	GO:0004672
	Stsc90626g00005	720	Pfam	Wall-associated receptor kinase galacturonan-binding	41	109	IPR025287	GO:0030247
	Stsc90626g00005	720	SMART	serkin_6	389	661	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc90626g00005	720	MobiDBLite	consensus disorder prediction	322	365	-	-
	Stsc90626g00005	720	Gene3D	Phosphorylase Kinase; domain 1	362	465	-	-
	Stsc90626g00005	720	SUPERFAMILY	Protein kinase-like (PK-like)	369	665	IPR011009	-
	Stsc90626g00005	720	ProSiteProfiles	Protein kinase domain profile.	389	670	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90626g00005	Stsc-Chr90626	9016	18146	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90626g00005	46	720	Receptor kinase-like Gene Family	AT1G25390	40.205	2.64e-142	429

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK_LRK10L-1	Stsc90626g00005		Pkinase	3.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90626g00005	-		-	aip:107635700	1102.04