Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00004 ATGGCTTCTCTGCTTGTTATGCTCCTCCCTCCTAACCTTATTCTTCTATACTTAATGATCCTCTTGATAATGATTCAGATTCCTCCATACTTAAGCTCCAATGATGATAACTTTACAAGTTGTGCTAGTACTACCTATGATTGTGGGGCGATTAACAACATTGGTTTTCCGTTCTGGGGAGGAAATCGTCCAAAGTGGTGTGGCCACCCTCTTCTACAACTCAACTGTGATGGTGATCATGGCTTCACTACTTACATAACCATCAAGGGCATGAGATACCAGGTTTTGGAAGCATACCCGGTTAACCAAACCATGAAGATAGCAAGAGTGGACTACTTTGAAGGTCTATGCCCTTCAAAACCAGTGAACACAACTCTTGACTTTGATCTCTTTGAATATGGGCCTGGAAATAAGAATCTTACCCTCTTCTATCATTGTTCTTCCAATAATGGTTTCTCCAATTTTCTTAATTGTTTCTCAAATGGGACTTCCAGTGAACACTTTTATGCTCAGCCTCAGGATCTAGGTGCTCCTCCTTCTGCTTTGATTTGCACAACAGAGGTGTTTGTTCCATTATTCCTGCAGCAATTTGATGAAGGGAACTTGTCATGGAACAAAATAGAAGGTGCTATCCAAAATGGATTCATGGTGAGATGGATAGGAGGTGTAGCAGAATGTGTGAAGTGTATGAACTCAGGTGGAGCCTGTGGCTATGACTGGAATTCAAATCAATCAAGATGTTATTGCAAAGATCAGTCTAATTCTTCATATTTGGGTGATAGAATCATCAAAACTTGTGATCCTTTTGCTTTGGCACCACCTAATCAAGATGATCATGGACCTTCATCAGATAAAAGTTCTAGCAAAGCTCCTGCTATAGCAGGTGCTACTGCAGGAGCTGTAGTCCTTGTTGTCCTTCTTTTAGGCACATTTTTTGTTGTAAGAAAAAGGAGAAGAAATGCTGAAAGATCAAGAAGCAACAAGGATAGTTTGCCTGTGAGTGGAGTCCCTCTTACATCTTCAACTACAACAAGTAGTAGTAACACGTCTCAGAGTGCTTCTTCTTACCCTTCCTCCAAGTCTGAGTCTGTTGTAGGGCCAAAGAGTTACTACTATGGTGTTCATGTGTTTGACTATGCTGAACTTGAGGAAGCAACCAAGAATTTTGACCCTTCTAGAGAAATTGGTGAGGGAGGCTTTGGCACTGTTTACAAAGGTATACTTCAAGATGGGCGCGTAGTTGCAGTGAAACGTCACTATGAAAGCCATTTAAAGCGTGTTGAGCAATACATGAATGAAGTTGAGATTCTGGCACACATGAGGCACAAGAATTTGGTCACTCTCTTTGGCTGTACTTCAAGACACAGCAGAGAACTCATCCTTGTTTATGAGTTTATACCGAACGGAACACTGGCCGATCACCTCCATGGAAGCCTTGCAAATTCCACCTTACTTCCTTGGAATGTAAGATACAACATTGCACTCGAAACAGCTGAGGCGCTGTCCTTCCTCCATTCTAAGAAAGTCATACACAGAGATGTTAAGTCCAACAACATTCTGCTTACAGAGAATTTTCAAGTTAAGGTTGCTGATTTTGGACTATCAAGGTTGTTTCCTAAATTTGTTACTCATGTCTCAACAGCACCGCAAGGAACACCGGGCTATGTTGATCCTGAGTATTACCAGAACTATCAATTAACCGATAAGAGTGATGTTTATAGCTTTGGAGTGGTGTTGGTTGAGCTTATATCTTCATTGCAAGCAGTGGACATAACCCGGCAGAGGAATGAAGTTAACTTGGCTAGTCTTGCAGTGAATAGGATACAGAACCAAGAACTGCATGAAATGGTTGATCCAGATCTTGGATTTGAGAGGGACAATGATGTAAGGAGGATGGTAACTGCAGTGGCTGAATTGGCATTCAGGTGCTTGCAGCAGCAGAGAGAGATGAGGCCCTCCATGGATGAGGTTCTTGAGGTCTTGAGAGGGGTAAAGAGTGATGAGTTTGGTGCAATACAGAAAAACTCATCAGAATCAGTGGTGGATTTTAATCATAGTAAGACAGAGGAGGCTATACTTTTGAAGAAGGTTCCATCACCATTTTCACCAGATTCTGTTGCTGATAAATGGCAGTGGGACATGCTAAGAAGAACGGCTTAA 2160 0.4185 MASLLVMLLPPNLILLYLMILLIMIQIPPYLSSNDDNFTSCASTTYDCGAINNIGFPFWGGNRPKWCGHPLLQLNCDGDHGFTTYITIKGMRYQVLEAYPVNQTMKIARVDYFEGLCPSKPVNTTLDFDLFEYGPGNKNLTLFYHCSSNNGFSNFLNCFSNGTSSEHFYAQPQDLGAPPSALICTTEVFVPLFLQQFDEGNLSWNKIEGAIQNGFMVRWIGGVAECVKCMNSGGACGYDWNSNQSRCYCKDQSNSSYLGDRIIKTCDPFALAPPNQDDHGPSSDKSSSKAPAIAGATAGAVVLVVLLLGTFFVVRKRRRNAERSRSNKDSLPVSGVPLTSSTTTSSSNTSQSASSYPSSKSESVVGPKSYYYGVHVFDYAELEEATKNFDPSREIGEGGFGTVYKGILQDGRVVAVKRHYESHLKRVEQYMNEVEILAHMRHKNLVTLFGCTSRHSRELILVYEFIPNGTLADHLHGSLANSTLLPWNVRYNIALETAEALSFLHSKKVIHRDVKSNNILLTENFQVKVADFGLSRLFPKFVTHVSTAPQGTPGYVDPEYYQNYQLTDKSDVYSFGVVLVELISSLQAVDITRQRNEVNLASLAVNRIQNQELHEMVDPDLGFERDNDVRRMVTAVAELAFRCLQQQREMRPSMDEVLEVLRGVKSDEFGAIQKNSSESVVDFNHSKTEEAILLKKVPSPFSPDSVADKWQWDMLRRTA 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00004 719 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 368 465 - -
Stsc90626g00004 719 Gene3D Phosphorylase Kinase; domain 1 362 465 - -
Stsc90626g00004 719 Pfam Wall-associated receptor kinase C-terminal 179 252 IPR032872 -
Stsc90626g00004 719 Gene3D Transferase(Phosphotransferase) domain 1 466 689 - -
Stsc90626g00004 719 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 711 IPR044652 GO:0004672
Stsc90626g00004 719 Pfam Protein kinase domain 392 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90626g00004 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Stsc90626g00004 719 MobiDBLite consensus disorder prediction 327 365 - -
Stsc90626g00004 719 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Stsc90626g00004 719 FunFam Wall-associated receptor kinase-like 20 466 674 - -
Stsc90626g00004 719 CDD STKc_IRAK 395 661 - -
Stsc90626g00004 719 Pfam Wall-associated receptor kinase galacturonan-binding 41 109 IPR025287 GO:0030247
Stsc90626g00004 719 SMART serkin_6 389 661 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90626g00004 719 MobiDBLite consensus disorder prediction 322 365 - -
Stsc90626g00004 719 ProSiteProfiles Protein kinase domain profile. 389 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90626g00004 719 SUPERFAMILY Protein kinase-like (PK-like) 369 665 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00004 Stsc-Chr90626 8332 18146 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00004 46 710 Receptor kinase-like Gene Family AT1G25390 40.208 8.54e-140 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc90626g00004 Pkinase 3.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00004 - - aip:107635700 1100.5