Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90626g00002 ATGGGCTCTCTACCAGAAATATTTCACTCCATGCCAAATTTGCATACTGTTGTTCTCTCCAACAATAGCCTCTCTGGCATCTTGCCAGAGTCTTTTAGAGGGTCCAAGGTTGCCACATTGCATCTCAACGACCAGAAGGGTAAGGGCTTTTCGGGTACAATTGATGTCATTTCAAGCATGCTCGATTTATCTGAAGCTTGGCTTCAGGGAAACTCTTTTGAAGGATATATCCCTGACATGTCTCGTTGTACAGCCTTGCAAGATTTACAACTTGCACGCAATCGATTAACAGGTGTCGTTCCAGATTCTCTCATAAATCTCTACAGTTTGCAAAGTGTTTCTTTGAGCAACAACTTTTTTCAGGGTCCTATTCCTACGTTTAACTTTTATACTGACAACGAGAGTCTTGGTGATAACACCACAAATGCCTTTTGTCGAAATGATTTTGAGCCTTGTGACCAGAGAGTTACCACTTTGCTTGAAATTGCTTCTACATTTGGATATCCTATTCTTTTGGCGCGTTCATGGCCAGGGAATAATCCTTGTCATAATTGGAGTTTTGTTGAATGCACCGGGCATATGATTACAACCGTGAATTTGACAAGCCTGAATTTGAATGGAACTATCTCACCTGCATTTGCTAACTTAACTCATTTGGAAAACTTGTATCTAAGTGGCAACAATTTAAACGGTTCAATACCCGGAAACTTGACAACTCTTCATCAACTCAAGAATCTCGATGTCTCCAATAACAACTTATCAGGAACAATTCCCGTTTTCTCAAGTGGAGTAAACCTGAATACTAAAGGCAATCCTTTGCTTGGGAGAAGAAATCAGCTTGCTTGGATTCCAGGCGCAATAGCAGCAGGTATTGGAGGTCTTGTTTTCTTGGTTATAATTATTCATCAGCGAAAGAGGTGTCTTAGCTTATTACAGAGGATGGCGTGTAAGAAAACAGGACCATTTGTTGATAATGAATTTGAGGAATTTTTGAGAAGTTATGGATCTTTGATGTTAAGGAGATATAATTATTCTCAAGTGAAAAGGATGACAAATTCGTTTCGAGATAAATTAGGAAAGGGAGGATATGGCATTGTGTACAAAGCATGCTTAAGTGATGGTTCTCCGGTGGCAGTGAAGGTATTAACCGAATCCAGTGGAAGCGGGGAGGAATTCATAAATGAGGTAGCAAGTATCAGTAGAACTTCTCATGTGAACATTGTCTCGCTTTTGGGATTTTGTTATGAGAAGAATAAAAGGGCACTCATCTATGAATTCATGCCTAATGGTTCTTTGGATAAGTTTATCTACAAACCAGAATCTCCCAATGCTTTTTGTAATTTGGATTGGAATACATTGTTTCAAATTACAATAGGTATTGCACGAGGATTAGAATATTTGCATCGAGGATGTAGTACAAGAATTTTACATCTTGATATTAAGCCTCAAAATATTCTTTTAGATGAAGACTTTTGTCCGAAAATTGCTGATTTCGGATTGGCAAAAATATGCAAGAAGAAGGAGAGCATTGTATCTATACTAGGTACAAGAGGAACTCCTGGATACATTGCACCAGAAGTATTTAGTCGAACCTTTGGTAAAGTTTCTCACAAATCTGACGTGTACAGTTTTGGTATGTTGATTCTTGAATTGGTGGGAGGGAGGAGAAACCACGACACTAGCGGATCACTTACTAGTGAGATGTATTTTCCAGATTGGATCTACAAGGATCTTGAGGAGCAAAGTATGCTTGGTCGGGGTTTGCCCACTACAAAAGAAGAAACTGATATGATAAAGAAAATTACTTTGGTAAGTCTATGGTGCATTCAAACAAGCCCAACAGATAGACCATCAATAAACAAAGTAGTTGAGATGTTAGAAGGGTCACTTGAATCAGTGCCTTATCCTCCAAAACCTGCCTTATATGCTCCTCAAATGTCTATGTCACAGTTTTCACGAATCTCCTATAGCAGTACAGAAGAGGAGGATTCTGAAACAGTTGAGGAGACTGTTTCCATCAAATAA 2025 0.3896 MGSLPEIFHSMPNLHTVVLSNNSLSGILPESFRGSKVATLHLNDQKGKGFSGTIDVISSMLDLSEAWLQGNSFEGYIPDMSRCTALQDLQLARNRLTGVVPDSLINLYSLQSVSLSNNFFQGPIPTFNFYTDNESLGDNTTNAFCRNDFEPCDQRVTTLLEIASTFGYPILLARSWPGNNPCHNWSFVECTGHMITTVNLTSLNLNGTISPAFANLTHLENLYLSGNNLNGSIPGNLTTLHQLKNLDVSNNNLSGTIPVFSSGVNLNTKGNPLLGRRNQLAWIPGAIAAGIGGLVFLVIIIHQRKRCLSLLQRMACKKTGPFVDNEFEEFLRSYGSLMLRRYNYSQVKRMTNSFRDKLGKGGYGIVYKACLSDGSPVAVKVLTESSGSGEEFINEVASISRTSHVNIVSLLGFCYEKNKRALIYEFMPNGSLDKFIYKPESPNAFCNLDWNTLFQITIGIARGLEYLHRGCSTRILHLDIKPQNILLDEDFCPKIADFGLAKICKKKESIVSILGTRGTPGYIAPEVFSRTFGKVSHKSDVYSFGMLILELVGGRRNHDTSGSLTSEMYFPDWIYKDLEEQSMLGRGLPTTKEETDMIKKITLVSLWCIQTSPTDRPSINKVVEMLEGSLESVPYPPKPALYAPQMSMSQFSRISYSSTEEEDSETVEETVSIK 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90626g00002 674 SUPERFAMILY RNI-like 4 261 - -
Stsc90626g00002 674 SUPERFAMILY Protein kinase-like (PK-like) 331 627 IPR011009 -
Stsc90626g00002 674 PANTHER OSJNBA0070M12.3 PROTEIN 1 633 - -
Stsc90626g00002 674 FunFam serine/threonine-protein kinase PBS1-like 324 426 - -
Stsc90626g00002 674 SMART serkin_6 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90626g00002 674 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Stsc90626g00002 674 SMART LRR_typ_2 216 240 IPR003591 -
Stsc90626g00002 674 SMART LRR_typ_2 83 106 IPR003591 -
Stsc90626g00002 674 SMART LRR_typ_2 11 34 IPR003591 -
Stsc90626g00002 674 Gene3D Phosphorylase Kinase; domain 1 327 426 - -
Stsc90626g00002 674 ProSiteProfiles Protein kinase domain profile. 352 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90626g00002 674 CDD STKc_IRAK 358 628 - -
Stsc90626g00002 674 Gene3D Ribonuclease Inhibitor 153 278 IPR032675 -
Stsc90626g00002 674 Pfam Protein kinase domain 356 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90626g00002 674 Gene3D Ribonuclease Inhibitor 1 148 IPR032675 -
Stsc90626g00002 674 FunFam PR5-like receptor kinase 427 636 - -
Stsc90626g00002 674 MobiDBLite consensus disorder prediction 653 674 - -
Stsc90626g00002 674 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Stsc90626g00002 674 Gene3D Transferase(Phosphotransferase) domain 1 427 634 - -
Stsc90626g00002 674 FunFam Leucine-rich repeat receptor-like kinase 154 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90626g00002 Stsc-Chr90626 1890 4128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90626g00002 338 645 Receptor kinase-like Gene Family AT5G38280 61.538 1.77e-131 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc90626g00002 Pkinase 1.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90626g00002 - K00924 aip:107635702 1079.32