Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00065 ATGGATAAAGATGATGGTGACCAAGGTAGTAATCCATTTTCTAACAACATTGTTGTGTTACTTCTTGCAATGGGTTCAGCTGCTTTTGTTGTCTCACTTTACCATCTCATATCAATTTGTTGTTGCAATAACCAACAAAATACCAATAATAATAATATTAATGGCCAAAATCAACAACATGATGGTGGTGGAGGTGAACCAAGCTCTGCTTCTACATCCGTGGCGCATTTGATTCCGTCGCATAAATTTTATAAGAAAAAGACTAGTGATGAGAGTGGGGATGATCATGGTGGCGGCGGCGACAGCGGTGGCACTTGTGCGGTGTGTTTGGGAGATTTTGAGGATGGTGAGGAGTTGAAGACTCTGCCGGAGTGCATGCACTCTTTTCACGTGACATGCATTGATATGTGGCTCAATTCTCACACAAGTTGCCCTGTTTTCCGGGCCAGCGCCACGCCGTCGCCGGCGGGGCTCAACCATGGCCCTTCAAATGTTTTTGGTCATCATCATGGTGGTGGTTATGGTTTGAATAATAATAATAGTAATAATGATGCATATCAAGGCATTGATATGGTGCAAATTGCTGTTGTCCAAAGTGGTTTGGTTCGGAGGTGA 615 0.4374 MDKDDGDQGSNPFSNNIVVLLLAMGSAAFVVSLYHLISICCCNNQQNTNNNNINGQNQQHDGGGGEPSSASTSVAHLIPSHKFYKKKTSDESGDDHGGGGDSGGTCAVCLGDFEDGEELKTLPECMHSFHVTCIDMWLNSHTSCPVFRASATPSPAGLNHGPSNVFGHHHGGGYGLNNNNSNNDAYQGIDMVQIAVVQSGLVRR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00065 204 CDD RING-H2_EL5-like 106 148 - -
Stsc90625g00065 204 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Stsc90625g00065 204 SMART ring_2 106 147 IPR001841 -
Stsc90625g00065 204 SUPERFAMILY RING/U-box 105 151 - -
Stsc90625g00065 204 Pfam Ring finger domain 105 146 IPR001841 -
Stsc90625g00065 204 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 153 IPR044675 -
Stsc90625g00065 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 153 IPR013083 -
Stsc90625g00065 204 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00065 Stsc-Chr90625 389258 389872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00065 18 152 C3H Transcription Factor Family AT5G17600 37.589 3.14e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00065 - - aip:107639941 244.973