Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00063 ATGGACTACGATTCAGATAACCCATCGCAAGATGGGAGGGATGAAGATGATGAAGAAGAATATGAGGAGTCTGGCAAGGATAGTGGTTTTTTGGCCCTCATGTTTGGAAATTTTGATAATTCCGGTGGTCTTGATGCTGATTACTTTGACGAGGATGCAAAGGAGCATATTCATGCATTGGCTGGCAAGTTGGATTCTTCACTGACAGATATAGATTTGTCAGGAAAATCACCACAAACACCACCTGATGTTGTTGAACAAGACTCTCTTCAAAAGGCTGAAGATGCAGTTGATTATGAAGATATTGATGAGGAGTACGATGGCCCAGAGACTGAAGCTGCAAATGAAGAGGACTATTTACTGCCAAAAAAGGAATTCTTTGCTGCTGAAGCCTCCCTGGAAGCTCTAGGGTCCAGAACTTCTGTCTTTGATGACGAAAATTATGATGAAGAATCTGACAAGGAACAAGATGGAGTTGATGATTCTAAAGCTGTCTCATTGGCTGGGGAGCAGGAAAAGAGTGTTGTAGATGCATCTAAAGAAGAGAGTGCACTTGAACGTGATGTACAAGTTGGTTTGCAGCAGACTGAAGAATTGGGCACCAAGGAAGGGCCTGAAGTTCTGAAAAGGTCTACACCGCTGCCAGTTTTGTATGTGGAAGATGGGATGGAAATCTTGCGCTTCTCTGAAATCTTTGGTATTCATGAACCTCTGAGGAAAGGAGAAAGGAGAGAGCATCGGCATTCTGTTACACAAGATAGATACAAATCATTGGATTTATCTGATGATATTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGATTCTCTCAGAGTCTTTCACTCACTAAACAGTCTTGTGTAATCCATAATGATGCGTCGGAAAGTAATGATGTTGATTTGGAATTTCCAAAATTTGGATTTCTTCATGGGGATGCCTCAATATCTGCGAAGGATGATCGGCAACAAAAGGACTCTTGTCTTAGTGCTGAACCAATGAAAGGTGATTTCACGAATGAGCTTTCATGGAATGGTACTTATGTCTTGTCTGCCAACTTTTATCCTCTTGATCAGCAAGACTGGGAAGATGAAATCATTTGGGGCAATTCTCCTGTTGTAAGTGACACTAATGTTGAGAGCTGTGAAATTTCGGGACCTGAATTGGGAGTGTCTGGTGGTAGTGAAATAGAAATTGAAAGTGGGATACAGAATTTACAGTTGGAGCCCCAAAAAATAATTGAGGAGGAAAAAAATAATGTTTTCGTGTGTAGCTCTCCTTTATCATTGGAACCATTTGGCTCAAGGGACTCCTCTGACGCTAAAACTGATTTATTATCTAAAAGTCTATTTCATCCCCAGCTTTTGAGGTTAGAGTCCAGATCCGAGATGGATGGCACTGGTCATGCAGATGGAAGAGGGGGGGACACATCTGAAAAGAATAATGAGCTTGGCCAAGTAAAGCGATTTACCAAGTTGATGTCTCAAAATAGAGACCTGACAGAGGGGTCTTGGTTAGACAATATTATATGGGAGTTTGATAAACCTTCTGTGAAACCAAAGCTTATCTTTGATCTCGAGGATGACCAAATGCACTTCGAACTCTTGGATAACAAGAATAGCAGCCATCTTCGACTTCATGCAGGGGCTATGATTTTGACTCGGTCCCTAAAATCAAGCAGTGGGGATTCCGAACAACCAGTTCAGGGAGGTCAATATGGATGGCGATATGTTGCTAATGATAAACACTATTCTAACAGGAAAACTTCCCAGCAACTGAAATCAAATTCTAAGAAACGCTCAGCGCATGGTGTCAAAATTTTCCACTCCCAACCTGCACTAAAGCTGCAGACGATGAAGTTGAAGTTGAGCAATAAAGATATTGCAAATTTTCACCGTCCTAAAGCATTATGGTATCCCCATGATAGTGAGGTTGTTGTCAAAGAACAAAGAAAATTGTCTACACAGGGACCTATGAAAGTTATCATGAAGAGCTTGGGTGGCAAGGGGACAAAACTGCATGTTGATGCCGAAGAAACTCTTGCTTCTGTTAAAGCAAAAGCTGCTAAAAAGCTAGATTTCAAGGGATCAGAAACCGTGAAAATATTTTATTTGGGGAGGGAGCTTGAGGATCAGAAATCACTTGCTGCACAGAGCGTTCAACCAAATTCATTGTTACACCTTGTACGTACAAAGGTACACTTGTGGTCAAGGGCACAAAGGGTTCCTGGTGAAAATAAGTCTTTGCGTCCTCCAGGGGCATTCAAGAAAAAGTCTGATCTGTCAGTGAAAGATGGCCATATTTTTCTGATGGAGTATTGTGAGGAAAGGCCTTTACTTTTGGGCAACGTTGGAATGGGTGCGAGACTTTGTACGTACTATCAAAAGTGTTCTTTGGATGATCAATCTGGCTCATTATTACGCAACGCGGATAACAGCTTAGGGCACATTATATCTCTGGATCCTGCTGATAAATCACCGTTCCTTGGGGACTTGAAACCTGGTTGCAGTCAGTCCTCACTTGAGACAAATATGTATAGAGCGCCTATATTTCCTCATAAAGTTCCATTAACTGACTACCTGCTGGTACGCTCACCGAAGGGAAAGCTATCCTTAAGGCGCATTGATAAAGTTAATGTTGTTGGACAGCAGGAGCCTCTCATGGAGGTATTATCACCCGGAAGTAAGAATCTTCAGACATACATGATGAACAGGCTATTAGTACACATGTGCCGTGAATTCCAAGCAGCAGAGAAGCGGCACGTGCTCCCATGCGTCCGTATTGATGAGCTCCTGTCACAATTTCCTTACCTATCAGAAGCCGCTTTCCGTAAAAGGATTAAGGAATATGCCACTTTACAGAGGGGAACAAATGGGCAGTCAATTTTGGTTAAAAAGCGAAATTTTCGCATGTGGTCTGAGGACGAATTGAGAAAAATGGTGACCCCAGAACTTGTTTGTGCTTATGAAAGCATGCAAGCTGGCCTCTACCGCCTAAAACATTTAGGCATAACCGAAACACACCCTGCTAATATTTCATCTGCAATGAGTCGGCTTCCCGATGAAGCAATTGCACTGGCTGCTGCATCACATATAGAAAGGGAACTGCAAATTACTCCTTGGAACTTGAGTAGCAACTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATCACTGGTGTCGGGGATCCATCTGGCCATGCTGATCTTCGCAGGTTAAGCATGGAGGCTGCACGAGAGGTGCTTCTTAAATTCAATGTTGCTGAGGAAGTCATTGCAAAACAAACAAGATGGCATCGCATTGCTATGATACGCAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCAACTACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCTTTCCTTCAGTTACAGCAACAGACCAGAGAGAAGTGCCAAGAAATTTGGGATCGACAACTTCAGAGCCTTTCAGCCGTAAATGGTGATGAAAATGAGAGTGATTCAGAAGAGAACAGTGATCTAGATTCTTTTGCTGGTGATCTTGAAAATTTACTTGATGCTGAGGAATGTGAAGAGGGACAAGAGGGTACCAATGACTTGAAACGTGATAAGGGAGATGGTGTTAAGGGTCTCAAAATGAGAAGACACCCAACATCGGCCCAAGCAAAGGAGGAAAAAGAAGATGAAGAAGCTGAGGCTGCCGAATTATGCAGGTTGCTTATGGATGATGATGAAGCTGACAGGAAGAAAAAGAAGAAAGCTAGAGTTGTGGAAGAAGCTAGACTGGTACCAAAGCCGCCGCCAAAATTCATCATCTATGACAGTACTGAACAAGTTAAGCAAGTAACAAATACTTTACAATTAGATGGAACCAGTCATTTGAAAGATGATGCAATTACAGATCTCAAGGAGGAGGAAACCTTTCCTGCTAAAAAAGTGAAGTCAGTGAAGGTCACAAAAGCAAAGAAGAACGAGATTACACCTATTAGTATACCTAATAAAAAACTCAAATTAAATATTGGAGAAGGAGCAATCAAGGTATTTAAGGAGAAAAAACCATCCAGGGAAACTTTTGTTTGTGGAGCATGTGGCCAGCTTGGGCACATGAGAACGAACAAGAACTGTCCAAAATATGGTGAGGATGTAGAAGCACAGATTGAATCTACAGAGATTGAAAAATCCTCTGGGAAACCTAGCATTTTGGATCCCCCTAATCAATCCCAGAATAAAATCGTCACGAAAAAGTTGGTGGCAAAAACTGCACCAAAAACTCCTTCAGTTGACAATTCTACGAAATTGAAGTTCATATGCGTCTCCTCTGAGAAATCTTCTGATAAACCTGCTATAGAAAACCTGCAGAGTTCTGAGAAGCCAGTCACTTCTGATTCTGAAACTGCTAGGTCTGCTAAGATTAATAGGATAATTATTCCTAAAAAGGTGAAGGCAGATGATACACAGGCTGAATCTGTTAGACCTGCTGTCATTTTCCGGCCTCCTACTGATTCTTCCAAGGTCCCAGTTAAATTTCGGCCACCTGCAGCAGACATAGAGAGGGAGAGACATCGCAATAAGATGTTTTCAAAACCTGCAAAGGAGATTGTAGATCTGGACCTTGACAGTCCTTATGGAAACAAAGGACTAGAACACAGAAAAACTAAGAGAATTGCTGAACTGGCCAATTTGGAGAAACAAAGAAAGCCAGAGCCCATGTATCGAACTGAAGGTTTGGTAAAATGGCATGCTAAAGAGGATAGAAGATGGTGGGAAGAGCAAGAGAAACGGAGAAATGAAGCGACACTCAAAGAAGAAAGGGCTAGAAGACATCACAAAGAAGAAATGAGGATGCTCAGAGAGCAAGAGAGGTTAGACGAGATAAAAAGATACGAAGAAGATATTAGAAGAGAGAGGGAGGAGGAAGAACGGCAAAAGGCAAAGAAGAAAAAGAAGAAGAAAAAACCTGAATTCACAGACGATTATTTAGATGATCCCAGAGCGAGAAGATATGATAAGAGGATGCTAGACAGAGACAAGAGCACGAAGAGGAGATCCATCGAGTTAGGAAAACGTGGTGTAGACTTGATGCCGCCAACAAAACGGCGAAGAGGCGGAGGGGGGGAGGTTGGTTTAGCAAACATATTGGAGAGCATTGTGGATGCCATTGTGAAAGATAGATATGATCTGTCATATCTTTTTGTGAAACCGGTGTCCAAGAAAGAGGCTCCTGATTACCTGGACATTATAGAGAGGCCTATGGATTTTTCTAGAATCCGGGAGAGGGTTCGGAACATGGAGTACAAGAGCCGAGAGGATTTCAGACACGATGTTTGGCAAATAACTTACAATGCTCATAAGTACAATGATGGGCGAAATCCTGGGATTCCACCCATTGCAGATAAGCTTCTGGAACATTGTGATTATTTGTTGAATGAGAATGATGATAGCCTCACTGAAGCTGAAGCTGGTATTGAGAGTAGAGATTTCTAA 5496 0.4218 MDYDSDNPSQDGRDEDDEEEYEESGKDSGFLALMFGNFDNSGGLDADYFDEDAKEHIHALAGKLDSSLTDIDLSGKSPQTPPDVVEQDSLQKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFAAEASLEALGSRTSVFDDENYDEESDKEQDGVDDSKAVSLAGEQEKSVVDASKEESALERDVQVGLQQTEELGTKEGPEVLKRSTPLPVLYVEDGMEILRFSEIFGIHEPLRKGERREHRHSVTQDRYKSLDLSDDIVEEDEEEFLKGFSQSLSLTKQSCVIHNDASESNDVDLEFPKFGFLHGDASISAKDDRQQKDSCLSAEPMKGDFTNELSWNGTYVLSANFYPLDQQDWEDEIIWGNSPVVSDTNVESCEISGPELGVSGGSEIEIESGIQNLQLEPQKIIEEEKNNVFVCSSPLSLEPFGSRDSSDAKTDLLSKSLFHPQLLRLESRSEMDGTGHADGRGGDTSEKNNELGQVKRFTKLMSQNRDLTEGSWLDNIIWEFDKPSVKPKLIFDLEDDQMHFELLDNKNSSHLRLHAGAMILTRSLKSSSGDSEQPVQGGQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKIFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDSEVVVKEQRKLSTQGPMKVIMKSLGGKGTKLHVDAEETLASVKAKAAKKLDFKGSETVKIFYLGRELEDQKSLAAQSVQPNSLLHLVRTKVHLWSRAQRVPGENKSLRPPGAFKKKSDLSVKDGHIFLMEYCEERPLLLGNVGMGARLCTYYQKCSLDDQSGSLLRNADNSLGHIISLDPADKSPFLGDLKPGCSQSSLETNMYRAPIFPHKVPLTDYLLVRSPKGKLSLRRIDKVNVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQAAEKRHVLPCVRIDELLSQFPYLSEAAFRKRIKEYATLQRGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPANISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGHADLRRLSMEAAREVLLKFNVAEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQLQSLSAVNGDENESDSEENSDLDSFAGDLENLLDAEECEEGQEGTNDLKRDKGDGVKGLKMRRHPTSAQAKEEKEDEEAEAAELCRLLMDDDEADRKKKKKARVVEEARLVPKPPPKFIIYDSTEQVKQVTNTLQLDGTSHLKDDAITDLKEEETFPAKKVKSVKVTKAKKNEITPISIPNKKLKLNIGEGAIKVFKEKKPSRETFVCGACGQLGHMRTNKNCPKYGEDVEAQIESTEIEKSSGKPSILDPPNQSQNKIVTKKLVAKTAPKTPSVDNSTKLKFICVSSEKSSDKPAIENLQSSEKPVTSDSETARSAKINRIIIPKKVKADDTQAESVRPAVIFRPPTDSSKVPVKFRPPAADIERERHRNKMFSKPAKEIVDLDLDSPYGNKGLEHRKTKRIAELANLEKQRKPEPMYRTEGLVKWHAKEDRRWWEEQEKRRNEATLKEERARRHHKEEMRMLREQERLDEIKRYEEDIRREREEEERQKAKKKKKKKKPEFTDDYLDDPRARRYDKRMLDRDKSTKRRSIELGKRGVDLMPPTKRRRGGGGEVGLANILESIVDAIVKDRYDLSYLFVKPVSKKEAPDYLDIIERPMDFSRIRERVRNMEYKSREDFRHDVWQITYNAHKYNDGRNPGIPPIADKLLEHCDYLLNENDDSLTEAEAGIESRDF 1831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00063 1831 ProSiteProfiles Ubiquitin domain profile. 658 728 IPR000626 GO:0005515
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 460 482 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 69 120 - -
Stsc90625g00063 1831 FunFam Transcription initiation factor TFIID subunit 1 640 730 - -
Stsc90625g00063 1831 SMART ubq_7 658 730 IPR000626 GO:0005515
Stsc90625g00063 1831 Pfam Ubiquitin family 663 730 IPR000626 GO:0005515
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 1 24 - -
Stsc90625g00063 1831 SUPERFAMILY Bromodomain 1696 1821 IPR036427 GO:0005515
Stsc90625g00063 1831 CDD Bromodomain 1716 1812 - -
Stsc90625g00063 1831 Gene3D - 641 730 - -
Stsc90625g00063 1831 SMART bromo_6 1706 1817 IPR001487 GO:0005515
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 1450 1470 - -
Stsc90625g00063 1831 ProSiteProfiles Bromodomain profile. 1727 1797 IPR001487 GO:0005515
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 1 28 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 138 188 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 1198 1234 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 97 114 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 1194 1234 - -
Stsc90625g00063 1831 Coils Coil 1223 1243 - -
Stsc90625g00063 1831 Coils Coil 1548 1568 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 70 86 - -
Stsc90625g00063 1831 MobiDBLite consensus disorder prediction 1638 1665 - -
Stsc90625g00063 1831 Gene3D - 1703 1830 IPR036427 GO:0005515
Stsc90625g00063 1831 Coils Coil 1622 1656 - -
Stsc90625g00063 1831 ProSitePatterns Bromodomain signature. 1732 1789 IPR018359 -
Stsc90625g00063 1831 SUPERFAMILY Ubiquitin-like 628 728 IPR029071 -
Stsc90625g00063 1831 Pfam Protein of unknown function (DUF3591) 578 1071 IPR022591 -
Stsc90625g00063 1831 Pfam Bromodomain 1718 1793 IPR001487 GO:0005515
Stsc90625g00063 1831 PRINTS Bromodomain signature 1744 1760 IPR001487 GO:0005515
Stsc90625g00063 1831 PRINTS Bromodomain signature 1730 1743 IPR001487 GO:0005515
Stsc90625g00063 1831 PRINTS Bromodomain signature 1760 1778 IPR001487 GO:0005515
Stsc90625g00063 1831 PRINTS Bromodomain signature 1778 1797 IPR001487 GO:0005515
Stsc90625g00063 1831 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1072 1830 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00063 Stsc-Chr90625 362308 379089 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00063 658 728 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 35.211 2.36e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00063 K03125 - gmx:100780733 2788.45