Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00062 ATGATGTTTCGTGTAATGTTTAATACAGCATTTATTCGGTCCAACATATTGATGCTGAACACTGATAACTTGGACATTCTATGGGATGCGAAGGAGCGGTATCCAAAAGGCTTTAGGGCTGAGGTTTTATTTGGAGAGGTTGAAAATATAAGTCCTCAACGGGCTCCAACAACCATGCTAAATGGTGAGGAGACAGGTGGATTGCCCATTGAAGCATTTTCAAGGGTTCAAGAACTGTTTAGTGGCGTAGAATGGGTCGACAGTGGTGATGCTGCTGCTGTCTGGCTGCTTAAACAATTAACTGTCCTAAATGATGTTAAAGAGTTTTCGAGGCTGCAAGGAAAAGGAAGTTGGTATTCATCGCCTGCTGACTCTGACGAAGAAAATAATGAATCAAGCACTGCTGATAGTTCGGATGAGGCCTTTGATGTTCCCAGGTTGTCTTCTGATACTCCAAAATTGTTGGCACATGACATCCCTGATTCAAACCATTTAGCTTCTGAGAATGATTGCGGTAATTATGAAAATCGCGATTCAGCAACACCTGATCAGTCATTGACAGATAATGTACCATCAGTTTGTCATGCTCCAAACAATGAATATTCTCCTTGTTCATCTCCACCATCACCTTTACCAATTCCTGCCACACAACCTTTGGTACCAACTCCAGCACAAGCCCCACATGCTCCAGTAACTTCGGCCCAACCACCGCCAACGCCTCCGCCTCCTCCTCCAATACTCGCAAGAACAGGTTCAGCCCCACCTCCACCCCCTCCACCTCCTCCACTACCTTCAAGGACAGGTTCTGCTCCACCACCTCCACCTACACCTCCTCCACTACCTGCAAGAACAGGTTCTACTCCACCACCTCCACCTCCACCTCCACCTCCACCTCCTCCACTACCTACAAGAACAGGTTCTGCTCCACCACCTCCACCTTCACCTCCTCCACTACCTGCAAGAACAGGTTCTACTCCACCACCTCCACCTCCACCTCCTCCAATACCTACAAGAACAGGTTCTGCTCCACCACCTCCACCTTCACCTCCTCCACTACCTGCGAGAACAGGTTCAGCACCACCACCTCCACCTCCTCCACTACCTTCAAGAACAGGTTCAGCACCACCACCTCCGCCTCCTCCAATGCCTACAAGAACAGGTTCAGCCCCACCACCTCCACCTCCAGCACCACCTGTAAGAGCAGGTTTTGCCCCACCACCTCCAGCTCCCCCTCCTCCTCCAGCACCTACATCTACACGAGCAGGTTCAACCCCACCAGCTCCACCTCCACCTCCACCACCTCCAGGACGATCAAGTTCAACGCCGCCTCCTCCCCCTCCCCCACCCTCAGGACCTGTACGGAAAAGCTTAACATCAGCCCCACCGCCGCCGCCTCCACCCCCTGCTGGGTCTGTACGAAAGGGTCCTGGTCCACCACCTCCACCTCCACCTCCAGGTGCTCAAACAGTTTCAGCCCCACCAGCTGCACCAAAGCCTCCAAATGCTCCTCCTCCACCTCCTGCAGGTAGAGCCTCTAGTGTGCCACCACCACCTGGCAAAGGCTCTTTAGCACCAAGTGTTGGAAGAGGCCGAGGTACTAGTGCAACTGTTAATGCACCTAAGAAAACTATGCTGAAGCCTCTACATTGGGTTAAAGTTGCTCGAGCAGCACAAGGGAGTTTATGGGCTGATTCACAAAAGCAAGATAATGAATCAAGGGCCCCTGAAATAGATATATCAGAACTTGAGAGCCTGTTTTCAGCAGCATCAGCTTCTGATGGGAGCAATGCTAAAGTTGGAGGTCGGCGTGGTTCTAATATCAACAAACCCGAGAAAGTACAATTGATTGACTTGCGTAGAGCATATAATTGTGAAATAATGCTCTCCAAAATCAAAATTCCTTTGCCGGATATGCTTAATGCTGTTCTAGCATTGGATTCTTCTGTTCTGGATATCGATCAGGTTGAGAATCTCATCAAGTTCTGTCCCACCAAGGAAGAGATGGAGATGTTGAAGAATTATAAAGGGGACAAGGATATGCTTGGAAAGTGTGAACAGTTTTTTATGGAGCTGATGAAGGTTCCACGAGTAGAAGCCAAATTAAGGGTGTTTGCTTTCAAAATCAACTTTTCTTCTCAGGTGAATGATTTGAGGAAAAATTTGAATACAATCAACAATGCTACTAAAGAGGTGAAAGAATCTGTGAAATTGCGCCAGATAATGCAGACTATTCTTACTTTGGGCAACGCCCTGAATCAGGGAACAGCAAGGGGATCAGCAGTTGGATTCAAATTGGACAGTCTTCTTAAGTTATCAGATACTCGTGCAAGAAATAACAAAATGACTTTGATGCATTATTTGTGCAAGCTTCTTGCTGAGAAAATGCCAGAATTGTTAGATTTTGACAAAGATCTTGTCCATTTGGAAGCAGCTTCTAAGATCCAACTGAAAGCATTGGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTGGAGAAGGTTGAGCAAGAACTCACTGCTTCTGAAAATGACGGTGCCATATCTACAGGTTTTCGTAAGGTGTTGAAGAATTTTCTTGATACTGCTGAAGCCGATGTGAGGTCTCTCATATCATTGTATTCTGAAGTGGGAAGAAATGCAGATTCTTTGTCCCAATACTTTGGGGAGGATCCAGCTAGGTGCCCTTTTGAGCAAGGTCTGACATTTTCTTTTGGTTAA 2715 0.4729 MMFRVMFNTAFIRSNILMLNTDNLDILWDAKERYPKGFRAEVLFGEVENISPQRAPTTMLNGEETGGLPIEAFSRVQELFSGVEWVDSGDAAAVWLLKQLTVLNDVKEFSRLQGKGSWYSSPADSDEENNESSTADSSDEAFDVPRLSSDTPKLLAHDIPDSNHLASENDCGNYENRDSATPDQSLTDNVPSVCHAPNNEYSPCSSPPSPLPIPATQPLVPTPAQAPHAPVTSAQPPPTPPPPPPILARTGSAPPPPPPPPPLPSRTGSAPPPPPTPPPLPARTGSTPPPPPPPPPPPPPLPTRTGSAPPPPPSPPPLPARTGSTPPPPPPPPPIPTRTGSAPPPPPSPPPLPARTGSAPPPPPPPLPSRTGSAPPPPPPPMPTRTGSAPPPPPPAPPVRAGFAPPPPAPPPPPAPTSTRAGSTPPAPPPPPPPPGRSSSTPPPPPPPPSGPVRKSLTSAPPPPPPPPAGSVRKGPGPPPPPPPPGAQTVSAPPAAPKPPNAPPPPPAGRASSVPPPPGKGSLAPSVGRGRGTSATVNAPKKTMLKPLHWVKVARAAQGSLWADSQKQDNESRAPEIDISELESLFSAASASDGSNAKVGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMLNAVLALDSSVLDIDQVENLIKFCPTKEEMEMLKNYKGDKDMLGKCEQFFMELMKVPRVEAKLRVFAFKINFSSQVNDLRKNLNTINNATKEVKESVKLRQIMQTILTLGNALNQGTARGSAVGFKLDSLLKLSDTRARNNKMTLMHYLCKLLAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISTGFRKVLKNFLDTAEADVRSLISLYSEVGRNADSLSQYFGEDPARCPFEQGLTFSFG 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00062 904 MobiDBLite consensus disorder prediction 166 202 - -
Stsc90625g00062 904 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 47 IPR035892 -
Stsc90625g00062 904 Coils Coil 816 843 - -
Stsc90625g00062 904 ProSiteProfiles C2 tensin-type domain profile. 1 47 IPR014020 -
Stsc90625g00062 904 Gene3D - 1 50 - -
Stsc90625g00062 904 MobiDBLite consensus disorder prediction 115 541 - -
Stsc90625g00062 904 PANTHER FORMIN-J 1 898 - -
Stsc90625g00062 904 SUPERFAMILY Formin homology 2 domain (FH2 domain) 610 897 - -
Stsc90625g00062 904 Pfam Formin Homology 2 Domain 539 897 IPR015425 -
Stsc90625g00062 904 ProSiteProfiles Formin homology-2 (FH2) domain profile. 535 904 IPR015425 -
Stsc90625g00062 904 MobiDBLite consensus disorder prediction 203 522 - -
Stsc90625g00062 904 SMART it6_source 250 897 IPR015425 -
Stsc90625g00062 904 Coils Coil 714 734 - -
Stsc90625g00062 904 Gene3D Formin, FH2 domain 534 901 IPR042201 -
Stsc90625g00062 904 FunFam Formin-like protein 534 901 - -
Stsc90625g00062 904 Pfam C2 domain of PTEN tumour-suppressor protein 1 45 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00062 Stsc-Chr90625 354077 359857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00062 509 897 FH2 protein (formin) Gene Family AT1G31810 77.970 0.0 643
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00062 - - adu:107487096 766.918