Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Stsc90625g00056 | ATGGAAGATGAACAAACCAACGAGATTCTTCAAGAGCTCCTCAAAGTTGAGGACGACATTCAAGATGTCCAAGAGCAAATTAGAGTGTTAGTTGAGAGGCAAGAGAAGTTGTATGAGAGAAAATCTGAGCTCAGTTCTATTCTGGAAGCCTGCACAGAATCTGGGAATGAGGTTAACAATGGGGCTTCCACTTCTCTGGAGAATTGGTCTGGGGAATTTCAATGGGACTCTGAAGCTGATGATCTCCGGTTGAACATTTTTGGCATTTCCTCTTACCGTGCAAACCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGGGATGTCTTGGTCATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCAGCTGTTCTTCGCGACGGGATTGCTCTTGTTGTTAGTCCCTTGCTTTCCTTAATCCAAGATCAGGTAATGGGTTTGACTGCCTTGGGGATTCCAGCACATATGTTGACTTCGACAACAAGTAAGGAAGATGAGAAGTTCATATACAAAGCACTGGAGAAGGGTGAGGGAGAACTCAAAATACTGTATGTCACTCCAGAAAAGATATCAAAAAGCAAGAGATTTATGTCAAAGCTTGAAAAGTGCCATCATGCTGGTCGTCTCTCACTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGATTTTCGACCTGACTACAAAAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAAAGGGTCCAAAATGATCTGATGGACATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACAGTGAACAGGCCAAACTTATTTTATATGGTGATGGAAAAATCATCTGTTGGAAAGGTGGTTATTGACGAAATTGCTGGATTTATTAAAGAATCTTATCCAAATAATGAATCTGGAATTGTATATTGTTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTACGGGAGAGAGGAATTAAAGCCAATTACTATCATGCAGATATGGATGTAAATGCTCGAGAAAAAGTACATATGTGGTGGAGCAGTAACAAGCTGCAGGTCATAGTTGGTACAGTAGCATTTGGTATGGGAATTAACAAGCCTGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATATTATCAGGAAAGTGGTCGAGCTGGACGCGATGGACTTCCTTCTGAATGTCTACTATACTTTAGGCCAGGTGATGTTCCTCGACAGAGTTCAATGGTCTTCTACGAAAATTCAGGATTGCAGAACTTGTATGACATTGTACGGTATTGTCAGTCCAAACGACAATGCCGACGAGGTGCCTTTTTCCGGCATTTTGCTGAGCCTCTGCAAGAGTGCAATGAGATGTGTGACAACTGTGCATTCCCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGACATGCAAAACTGATGATTTCATTGTTGCAAGATATTCAAGCAAATGATCAGAGGACAACAATGTTGCAATTAGTTGAAAAAATTAAAGTGAAGCAGAAGGAACTAGGTTCGGATTTGAAAAAAGAGGAAATTGAGCAGCTCATCTTACAGCTATTGCTGGAGCATGTTTTGAAAGAAGAATTTCAGCATACAGCGTATGCAACAAATTCTTACATTGCTTTAGGACCACTCGCCAAGCCAATATTGCAAGGGAAAAAGGCTGTGAAGCTTGAGATTTGTAATGAACATGGAAATAAGGCTTCTGTAAGATCTGCGAAACGGAGCCTTGGGTCCTCGGGTTTGGAGCTAAAGCTTGATGAGTTGAGAAAGGAATTGTCTTCTGTTCATGGAGGAATACTACCACACTCTATCCTGTCCACCCAACAAATCAGCTTATTAAGTTCTCAAAAACCAAAGTCATTAGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAAAAAAGTATGGTAGTCAAATTCTTGAGCAGATTGAAAAATATTCTGATTTCAAGCCAGATGATCAGCAAGAAAGTGGTGCTAGTGCTGCTAAGAGATCAAGGACCAAAAAGAACCTTGTCCTTGTTGAGAGTAGTGAAGATGAAGCATGA | 2118 | 0.4117 | MEDEQTNEILQELLKVEDDIQDVQEQIRVLVERQEKLYERKSELSSILEACTESGNEVNNGASTSLENWSGEFQWDSEADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMDMLHIPRCVKFVSTVNRPNLFYMVMEKSSVGKVVIDEIAGFIKESYPNNESGIVYCFSRKECEQVAKELRERGIKANYYHADMDVNAREKVHMWWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRGAFFRHFAEPLQECNEMCDNCAFPSEVKEVDVSRHAKLMISLLQDIQANDQRTTMLQLVEKIKVKQKELGSDLKKEEIEQLILQLLLEHVLKEEFQHTAYATNSYIALGPLAKPILQGKKAVKLEICNEHGNKASVRSAKRSLGSSGLELKLDELRKELSSVHGGILPHSILSTQQISLLSSQKPKSLEQLEKVIGKLKTKKYGSQILEQIEKYSDFKPDDQQESGASAAKRSRTKKNLVLVESSEDEA | 705 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Stsc90625g00056 | 705 | Pfam | RecQ zinc-binding | 422 | 478 | IPR032284 | - | |
Stsc90625g00056 | 705 | PANTHER | DNA HELICASE RECQ FAMILY MEMBER | 69 | 659 | - | - | |
Stsc90625g00056 | 705 | FunFam | ATP-dependent DNA helicase | 602 | 672 | - | - | |
Stsc90625g00056 | 705 | SMART | ultradead3 | 88 | 291 | IPR014001 | - | |
Stsc90625g00056 | 705 | Gene3D | HRDC domain | 602 | 672 | IPR044876 | - | |
Stsc90625g00056 | 705 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 100 | 275 | IPR014001 | - | |
Stsc90625g00056 | 705 | FunFam | ATP-dependent DNA helicase | 49 | 282 | - | - | |
Stsc90625g00056 | 705 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 300 | 449 | IPR001650 | - | |
Stsc90625g00056 | 705 | Pfam | RQC domain | 484 | 584 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Stsc90625g00056 | 705 | MobiDBLite | consensus disorder prediction | 670 | 705 | - | - | |
Stsc90625g00056 | 705 | NCBIfam | RecQ family ATP-dependent DNA helicase | 85 | 510 | IPR004589 | GO:0004386|GO:0006310 | |
Stsc90625g00056 | 705 | FunFam | ATP-dependent DNA helicase | 483 | 583 | - | - | |
Stsc90625g00056 | 705 | SUPERFAMILY | HRDC-like | 607 | 672 | IPR010997 | GO:0000166|GO:0044237 | |
Stsc90625g00056 | 705 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 131 | 426 | IPR027417 | - | |
Stsc90625g00056 | 705 | SMART | RQC_2 | 487 | 584 | IPR018982 | GO:0006260|GO:0006281|GO:0043138 | |
Stsc90625g00056 | 705 | Pfam | DEAD/DEAH box helicase | 94 | 262 | IPR011545 | GO:0003676|GO:0005524 | |
Stsc90625g00056 | 705 | FunFam | ATP-dependent DNA helicase | 283 | 479 | - | - | |
Stsc90625g00056 | 705 | Pfam | HRDC domain | 607 | 666 | IPR002121 | GO:0003676 | |
Stsc90625g00056 | 705 | Gene3D | - | 483 | 583 | IPR036388 | - | |
Stsc90625g00056 | 705 | Gene3D | - | 283 | 479 | IPR027417 | - | |
Stsc90625g00056 | 705 | CDD | DEXHc_RecQ1 | 75 | 282 | - | - | |
Stsc90625g00056 | 705 | CDD | SF2_C_RecQ | 283 | 419 | - | - | |
Stsc90625g00056 | 705 | Pfam | Helicase conserved C-terminal domain | 314 | 409 | IPR001650 | - | |
Stsc90625g00056 | 705 | Coils | Coil | 6 | 40 | - | - | |
Stsc90625g00056 | 705 | ProSiteProfiles | HRDC domain profile. | 598 | 677 | IPR002121 | GO:0003676 | |
Stsc90625g00056 | 705 | SMART | helicmild6 | 329 | 410 | IPR001650 | - | |
Stsc90625g00056 | 705 | Gene3D | - | 50 | 282 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Stsc90625g00056 | Stsc-Chr90625 | 324012 | 331400 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Stsc90625g00056 | 87 | 424 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 20.506 | 1.63e-07 | 52.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Stsc90625g00056 | K10899 | - | gmx:100817635 | 1153.66 |