Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00056 ATGGAAGATGAACAAACCAACGAGATTCTTCAAGAGCTCCTCAAAGTTGAGGACGACATTCAAGATGTCCAAGAGCAAATTAGAGTGTTAGTTGAGAGGCAAGAGAAGTTGTATGAGAGAAAATCTGAGCTCAGTTCTATTCTGGAAGCCTGCACAGAATCTGGGAATGAGGTTAACAATGGGGCTTCCACTTCTCTGGAGAATTGGTCTGGGGAATTTCAATGGGACTCTGAAGCTGATGATCTCCGGTTGAACATTTTTGGCATTTCCTCTTACCGTGCAAACCAAAGAGAGATAATTAATGCCATTATGAGTGGAAGGGATGTCTTGGTCATTATGGCTGCAGGTGGTGGCAAGAGCCTCTGCTACCAGCTTCCAGCTGTTCTTCGCGACGGGATTGCTCTTGTTGTTAGTCCCTTGCTTTCCTTAATCCAAGATCAGGTAATGGGTTTGACTGCCTTGGGGATTCCAGCACATATGTTGACTTCGACAACAAGTAAGGAAGATGAGAAGTTCATATACAAAGCACTGGAGAAGGGTGAGGGAGAACTCAAAATACTGTATGTCACTCCAGAAAAGATATCAAAAAGCAAGAGATTTATGTCAAAGCTTGAAAAGTGCCATCATGCTGGTCGTCTCTCACTAATTTCAATTGATGAGGCACATTGCTGTAGTCAGTGGGGCCATGATTTTCGACCTGACTACAAAAACCTTGGTATTCTCAAGACTCAATTCCCTAATGTTCCTATGGTTGCTTTGACTGCAACTGCTACTCAAAGGGTCCAAAATGATCTGATGGACATGTTGCATATTCCAAGATGTGTCAAATTTGTCAGCACAGTGAACAGGCCAAACTTATTTTATATGGTGATGGAAAAATCATCTGTTGGAAAGGTGGTTATTGACGAAATTGCTGGATTTATTAAAGAATCTTATCCAAATAATGAATCTGGAATTGTATATTGTTTCTCTAGGAAGGAATGTGAACAGGTTGCAAAGGAGTTACGGGAGAGAGGAATTAAAGCCAATTACTATCATGCAGATATGGATGTAAATGCTCGAGAAAAAGTACATATGTGGTGGAGCAGTAACAAGCTGCAGGTCATAGTTGGTACAGTAGCATTTGGTATGGGAATTAACAAGCCTGATGTCAGGTTTGTCATCCATCACAGCTTGAGTAAATCAATGGAAACATATTATCAGGAAAGTGGTCGAGCTGGACGCGATGGACTTCCTTCTGAATGTCTACTATACTTTAGGCCAGGTGATGTTCCTCGACAGAGTTCAATGGTCTTCTACGAAAATTCAGGATTGCAGAACTTGTATGACATTGTACGGTATTGTCAGTCCAAACGACAATGCCGACGAGGTGCCTTTTTCCGGCATTTTGCTGAGCCTCTGCAAGAGTGCAATGAGATGTGTGACAACTGTGCATTCCCAAGTGAGGTGAAGGAAGTGGATGTCTCTCGACATGCAAAACTGATGATTTCATTGTTGCAAGATATTCAAGCAAATGATCAGAGGACAACAATGTTGCAATTAGTTGAAAAAATTAAAGTGAAGCAGAAGGAACTAGGTTCGGATTTGAAAAAAGAGGAAATTGAGCAGCTCATCTTACAGCTATTGCTGGAGCATGTTTTGAAAGAAGAATTTCAGCATACAGCGTATGCAACAAATTCTTACATTGCTTTAGGACCACTCGCCAAGCCAATATTGCAAGGGAAAAAGGCTGTGAAGCTTGAGATTTGTAATGAACATGGAAATAAGGCTTCTGTAAGATCTGCGAAACGGAGCCTTGGGTCCTCGGGTTTGGAGCTAAAGCTTGATGAGTTGAGAAAGGAATTGTCTTCTGTTCATGGAGGAATACTACCACACTCTATCCTGTCCACCCAACAAATCAGCTTATTAAGTTCTCAAAAACCAAAGTCATTAGAACAGTTGGAGAAGGTAATTGGAAAATTGAAGACAAAAAAGTATGGTAGTCAAATTCTTGAGCAGATTGAAAAATATTCTGATTTCAAGCCAGATGATCAGCAAGAAAGTGGTGCTAGTGCTGCTAAGAGATCAAGGACCAAAAAGAACCTTGTCCTTGTTGAGAGTAGTGAAGATGAAGCATGA 2118 0.4117 MEDEQTNEILQELLKVEDDIQDVQEQIRVLVERQEKLYERKSELSSILEACTESGNEVNNGASTSLENWSGEFQWDSEADDLRLNIFGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQDQVMGLTALGIPAHMLTSTTSKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPNVPMVALTATATQRVQNDLMDMLHIPRCVKFVSTVNRPNLFYMVMEKSSVGKVVIDEIAGFIKESYPNNESGIVYCFSRKECEQVAKELRERGIKANYYHADMDVNAREKVHMWWSSNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPRQSSMVFYENSGLQNLYDIVRYCQSKRQCRRGAFFRHFAEPLQECNEMCDNCAFPSEVKEVDVSRHAKLMISLLQDIQANDQRTTMLQLVEKIKVKQKELGSDLKKEEIEQLILQLLLEHVLKEEFQHTAYATNSYIALGPLAKPILQGKKAVKLEICNEHGNKASVRSAKRSLGSSGLELKLDELRKELSSVHGGILPHSILSTQQISLLSSQKPKSLEQLEKVIGKLKTKKYGSQILEQIEKYSDFKPDDQQESGASAAKRSRTKKNLVLVESSEDEA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00056 705 Pfam RecQ zinc-binding 422 478 IPR032284 -
Stsc90625g00056 705 PANTHER DNA HELICASE RECQ FAMILY MEMBER 69 659 - -
Stsc90625g00056 705 FunFam ATP-dependent DNA helicase 602 672 - -
Stsc90625g00056 705 SMART ultradead3 88 291 IPR014001 -
Stsc90625g00056 705 Gene3D HRDC domain 602 672 IPR044876 -
Stsc90625g00056 705 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 275 IPR014001 -
Stsc90625g00056 705 FunFam ATP-dependent DNA helicase 49 282 - -
Stsc90625g00056 705 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 300 449 IPR001650 -
Stsc90625g00056 705 Pfam RQC domain 484 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Stsc90625g00056 705 MobiDBLite consensus disorder prediction 670 705 - -
Stsc90625g00056 705 NCBIfam RecQ family ATP-dependent DNA helicase 85 510 IPR004589 GO:0004386|GO:0006310
Stsc90625g00056 705 FunFam ATP-dependent DNA helicase 483 583 - -
Stsc90625g00056 705 SUPERFAMILY HRDC-like 607 672 IPR010997 GO:0000166|GO:0044237
Stsc90625g00056 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 426 IPR027417 -
Stsc90625g00056 705 SMART RQC_2 487 584 IPR018982 GO:0006260|GO:0006281|GO:0043138
Stsc90625g00056 705 Pfam DEAD/DEAH box helicase 94 262 IPR011545 GO:0003676|GO:0005524
Stsc90625g00056 705 FunFam ATP-dependent DNA helicase 283 479 - -
Stsc90625g00056 705 Pfam HRDC domain 607 666 IPR002121 GO:0003676
Stsc90625g00056 705 Gene3D - 483 583 IPR036388 -
Stsc90625g00056 705 Gene3D - 283 479 IPR027417 -
Stsc90625g00056 705 CDD DEXHc_RecQ1 75 282 - -
Stsc90625g00056 705 CDD SF2_C_RecQ 283 419 - -
Stsc90625g00056 705 Pfam Helicase conserved C-terminal domain 314 409 IPR001650 -
Stsc90625g00056 705 Coils Coil 6 40 - -
Stsc90625g00056 705 ProSiteProfiles HRDC domain profile. 598 677 IPR002121 GO:0003676
Stsc90625g00056 705 SMART helicmild6 329 410 IPR001650 -
Stsc90625g00056 705 Gene3D - 50 282 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00056 Stsc-Chr90625 324012 331400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00056 87 424 Eukaryotic Initiation Factors Gene Family AT3G19760 20.506 1.63e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00056 K10899 - gmx:100817635 1153.66