Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00049 ATGTTCAGTGGCGAGGACGCCCGAGCAGCTCGCCTCGGCATGCTAGCGCCGCCGCAGCCTCAGATGTTGAATCCGCCGACATCGCCGGTGATTTCCGGCGAGATATCGCCGACGACGGCGGGGAGAGAGGAGAGGGTTCCGGCGCAGCCGCAGTGGAGCCAGCAGGAGACGAGAGAGTTCATAGCGATACGCGCGGAGCTTGAGAGGGACTTCACTGCTTCGAAGCGGAACAAGACGCTTTGGGAGGTTGTGAGCTCCAAGATGAGGGAGAGAGGGTTCAGGAGGAGCCCCGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAAGGGAAAAGAGACATCTGATCCGGAGCATAGCAGGCAATGCCCATTTTTTGAAGAATTGCATGCAGTATTTACTGAAAGAGCGCGTAATATGCAACGATTGCTCCTAGAAACTGAGGCTCGTTCAGCTCAAACGAAGAAAGGGGTGAAAAGGTCAAGTGGAGAAAGGTCCTCAGAGGAATACTCTGAAGATGATGAGGAGGTAGAAGATGACAGTGAAGAGGAGAGGCCTTCTAGAAGCAATGCTCGCAAAAGGAAAGTTGACAAAAGTGACAAGTCTTCAAAGGCGAACAATCCATCAAATACTTTCACTAATACTGCTAATAGTATTCAGGATATGCTCAATGAATTTTTCCAGCAACAGCTAAGGATGGAGATGCAATGGAGGGAAATGATGGATAGGCGTGCCCAAGAAAGACAGCTTTTTGAGCAGGAATGGAGGCACACAATGGAGAAACTTGAGAGGGAGAGATTATTAATTGAACAGACATGGAGGGAGAGGGAAGAACAGAGGAGAATGAGGGAAGAGAGCCGGGCAGAGAGGAGGGATGCTTTGTTGACAACTCTTTTGAACAAACTCATACATGAATCTAACTAA 930 0.4946 MFSGEDARAARLGMLAPPQPQMLNPPTSPVISGEISPTTAGREERVPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHSRQCPFFEELHAVFTERARNMQRLLLETEARSAQTKKGVKRSSGERSSEEYSEDDEEVEDDSEEERPSRSNARKRKVDKSDKSSKANNPSNTFTNTANSIQDMLNEFFQQQLRMEMQWREMMDRRAQERQLFEQEWRHTMEKLERERLLIEQTWREREEQRRMREESRAERRDALLTTLLNKLIHESN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00049 309 ProSiteProfiles Myb-like domain profile. 52 108 IPR001005 -
Stsc90625g00049 309 PANTHER FI21293P1 43 306 - -
Stsc90625g00049 309 MobiDBLite consensus disorder prediction 150 217 - -
Stsc90625g00049 309 CDD GT1 50 115 - -
Stsc90625g00049 309 MobiDBLite consensus disorder prediction 170 184 - -
Stsc90625g00049 309 MobiDBLite consensus disorder prediction 1 54 - -
Stsc90625g00049 309 MobiDBLite consensus disorder prediction 154 169 - -
Stsc90625g00049 309 Gene3D - 52 113 - -
Stsc90625g00049 309 SMART sant 48 110 IPR001005 -
Stsc90625g00049 309 MobiDBLite consensus disorder prediction 185 204 - -
Stsc90625g00049 309 FunFam Zinc finger and SCAN domain-containing 20 52 113 - -
Stsc90625g00049 309 Pfam Myb/SANT-like DNA-binding domain 50 133 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00049 Stsc-Chr90625 289932 291924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00049 36 309 Trihelix Transcription Factor Family AT2G38250 42.958 4.42e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc90625g00049 Myb_DNA-bind_4 5.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00049 - - pcin:129311173 405.216