Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00028 ATGAGTACATTATTCACTTTCCTTATTATTACTACCCTGAACTCATCACTGTGGTTTGTCTCAAACACTAGTAGTTGTGCCCACGCATTACTGCTAGGAAATGAAACTGATCATTTGGCATTGCTCAAGTTCAAGGAATCAATTTCCAGTGACCCTTTTGGAATTTTGAATTCTTGGAATGATACCTCTAACAACCAGTTTTGCAATTGGCCAGGAATCAAATGCAACAAAAGACCCAATAAGCAACAAAGGGTTATTGGTTTGAACTTAACAGGATATCATCTGCATGGACCTCTGTCTCCTCAACTCAGCAATCTCTCTTTTCTGAGGTACATAGACCTTGAAAACAATAGCTTCTATGGAGATATCCCACAAGAACTTGGTCGCTTGAAACGCCTGCAAGTACTTTATCTTAATAACAATTCTCTAACAGGTGAATTTCCTATAAACTTGACAAGTTGTTCTCAACTCTCACACTTTGACTTCTCATGGAACAATTTGATTGGTAACATACCAATTCAAATTGGATCTCTTTCCAAGCTCCAAGAATTTTTCATTGAGAGCAATAATTTCAGTGGAAGTATCCCACCTTCCATAGGTAATCTTACATCCCTCACTGCCCTAGTCTTGCTTTCAAATAACTTGGAGGGGACTATTCCACAAGAATTATGTTCCTTGCAAAACTTGACATATCTATTACTTGATTCGAACAAACTTTCGGGTATACTTCCCTCTTGTCTTTACAATAATATGTCATCTCTGAGTGTGTTGTCAATTTCATACAATAACATTAATGGATCTTTTCCAGCCAACATGTTCCACAAGCTCCCCAATCTTCAATTCTTTCAAGTTGCACAAAATCAATTGTCAGGCACAATTCCAATTTCTGTCACAAATGGATCTTTACTACAAATACTTGATTTCGCGGGAAACCATTTTGTGGGACAAGTACCAAGCCTAGGGAAGCTAACAAAACTCAGACTTCTAAATGTATGTTCGAATAATCTAGGTGGATTTCCATCTAAGGATTTAAAGTTCTTGAAATCATTGACAAACTGTACCAACTTGTACAGGCTTGTTATATGTGGCAATAACTTTGGTGGCCAGCTTCCAAATTATGTTGGTAATTTGTCTACACAACTAAGTGTTCTGCATCTTGGTTATAACCACATATATGGAAAAATTCCTGCTGAGTTAGGAAATCTGGTTAACTTAACTCTCTTGGACATGCAAAACTGCAGTTTTGATGGGAATATTCCAACTACTTTTGGACGGTTTCAAAAGATTGGAATATTAGAGTTGAGTGAAAACAAGCTCTCAGGAGAGATTCCAGCCTTTATAGGCAACCTCAGCCAGTTGTTTTTCTTGAATTTGGCAGACAATATGTTTGAAGGAAGCATTCCTTCAAGCATAGGAAACTGCCAGAGCTTACAACATCTTAATTTTTCCATGAACAATCTCACCGGAACCATACCATCTGAGATATTTAGCATTTCTTCCTTAACAATCTTATTAGACTTGTCACAAAACTCATTCAGTGGCAATCTATCTGATGAGGTGGGAAATCTAGAAAATCTCAATGTCCTTAAACTCTCTGAGAATAATCTAGTTGGAAACATTCCTACTAGCATTGCAAAGTGCCTAAGTTTGGAGTTCCTTTATTTGCAAGGTAACTCATTCTCTGGAACCATACCATCCTCTTTGGTTTCACTGAAAGGTCTTCGAGAATTAGACATATCGCGAAACCATTTGTCCGGTTCAATTCCTGAAGGCTTGCAGAACATTTCACTAGACTATCTCAATATCTCTTTCAACATGTTGGATGGTCAAGTACCTTCAGGAGGAGTATTCAGAAATGTGACTGAGTTTGCAGTTACTGGAAACAATAAGCTTTGTGGGGGTGTTTCAGAGCTTCATTTACCACCATGCCCTTCTGAAGCTAAGAAACCTAAGAGACACCACAATTTCAGGTTGATTGCTGTGATAGTTTGTGTGTGCGCTATTTTGTTCTTCTTATCTCTTTTCCTAACCATTTATTGGATGAGGAAGAGAAGCAGGAAAATGTCTGATGATTCACCAACAATTGAACAGCTGGCTAAGGTTTCATATCAAAGCCTTCACAATGGAACAAATGGATTCTCAGAAGAAAATCTGATAGGGTCTGGAAGTTTTGGCTCTGTATACAAGGGAACTCTTGAGCTAGAAGGAAGTGTTGTTGCTGTTGCCATAAAGGTCCTAAAGCTTCAACAGAAAGGTGCTGAAAAGAGTTTTGTTGCTGAATGTAATGCACTCAGGAATGTGAGGCATAGAAATCTGGTGAAGATTTTAACATGTTGCTCAGGTACAGATTATAAAGGGCAAGAGTTCAAGGCTCTAGTTTTTGAGTTCATGACAAATGGAAGCCTAGAAAGTTGGTTACATCCACCATCAACAGGAATTGCAAATCACAGTGATGATAGAGCACTGAACCTTGAGCAAAGGCTAAACATCATCAATGATGTGGCCTCTGCAGTTCATTATCTTCACTATGAATGTGATCCAACCATTATTCATTGTGATTTAAAGCCAAGCAATGTTCTTCTGGATGATTTCATGGTAGCTCATGTAGGTGATTTTGGCCTAGCAAGACTAATTGGGAAGAATATTATTGGAGTCTCTTGTATGCAAACAAGCTCAATGGGACTTAAAGGAACTTTTGGTTATGCTCCTCCAGAGTATGGAATGGGTTACCAAGTGTGTATGGAAGGAGATATTTACAGCTTTGGAATTCTGATATTAGAAATGCTGACCGGAAAGAGGCCCACGGATGAGATGTTCAAGGATGGTTACAATCTTCATAATTATGTTCAAGTTTCAATTTCAAGTAACATTTTGCAGATTGTGGATCCTGGTGTCCTTTCCAAGGGAAATCAACTGCATTCTAGTGTTGGAAGCTGTTTAATTTCACTGCTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAATGAAAGAATGGCCATGGTTGATGTCATGAGAGAGCTTAATCGAATCAAAGGCTGTTTTCCTTCTGCTGAACTCATGGAAGAAGCAGATTAG 3078 0.3847 MSTLFTFLIITTLNSSLWFVSNTSSCAHALLLGNETDHLALLKFKESISSDPFGILNSWNDTSNNQFCNWPGIKCNKRPNKQQRVIGLNLTGYHLHGPLSPQLSNLSFLRYIDLENNSFYGDIPQELGRLKRLQVLYLNNNSLTGEFPINLTSCSQLSHFDFSWNNLIGNIPIQIGSLSKLQEFFIESNNFSGSIPPSIGNLTSLTALVLLSNNLEGTIPQELCSLQNLTYLLLDSNKLSGILPSCLYNNMSSLSVLSISYNNINGSFPANMFHKLPNLQFFQVAQNQLSGTIPISVTNGSLLQILDFAGNHFVGQVPSLGKLTKLRLLNVCSNNLGGFPSKDLKFLKSLTNCTNLYRLVICGNNFGGQLPNYVGNLSTQLSVLHLGYNHIYGKIPAELGNLVNLTLLDMQNCSFDGNIPTTFGRFQKIGILELSENKLSGEIPAFIGNLSQLFFLNLADNMFEGSIPSSIGNCQSLQHLNFSMNNLTGTIPSEIFSISSLTILLDLSQNSFSGNLSDEVGNLENLNVLKLSENNLVGNIPTSIAKCLSLEFLYLQGNSFSGTIPSSLVSLKGLRELDISRNHLSGSIPEGLQNISLDYLNISFNMLDGQVPSGGVFRNVTEFAVTGNNKLCGGVSELHLPPCPSEAKKPKRHHNFRLIAVIVCVCAILFFLSLFLTIYWMRKRSRKMSDDSPTIEQLAKVSYQSLHNGTNGFSEENLIGSGSFGSVYKGTLELEGSVVAVAIKVLKLQQKGAEKSFVAECNALRNVRHRNLVKILTCCSGTDYKGQEFKALVFEFMTNGSLESWLHPPSTGIANHSDDRALNLEQRLNIINDVASAVHYLHYECDPTIIHCDLKPSNVLLDDFMVAHVGDFGLARLIGKNIIGVSCMQTSSMGLKGTFGYAPPEYGMGYQVCMEGDIYSFGILILEMLTGKRPTDEMFKDGYNLHNYVQVSISSNILQIVDPGVLSKGNQLHSSVGSCLISLLRIGLACSVESPNERMAMVDVMRELNRIKGCFPSAELMEEAD 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00028 1025 SUPERFAMILY Protein kinase-like (PK-like) 686 1008 IPR011009 -
Stsc90625g00028 1025 Gene3D Transferase(Phosphotransferase) domain 1 797 1017 - -
Stsc90625g00028 1025 Gene3D Phosphorylase Kinase; domain 1 676 796 - -
Stsc90625g00028 1025 Pfam Leucine rich repeat 228 289 IPR001611 GO:0005515
Stsc90625g00028 1025 SMART LRR_typ_2 178 202 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 571 594 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 130 154 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 276 300 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 226 249 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 323 346 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 523 547 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 450 474 IPR003591 -
Stsc90625g00028 1025 SMART LRR_typ_2 251 275 IPR003591 -
Stsc90625g00028 1025 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 80 346 - -
Stsc90625g00028 1025 Gene3D Ribonuclease Inhibitor 320 652 IPR032675 -
Stsc90625g00028 1025 ProSiteProfiles Protein kinase domain profile. 713 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00028 1025 ProSitePatterns Protein kinases ATP-binding region signature. 719 744 IPR017441 GO:0005524
Stsc90625g00028 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 684 796 - -
Stsc90625g00028 1025 Gene3D Ribonuclease Inhibitor 251 319 IPR032675 -
Stsc90625g00028 1025 Gene3D Ribonuclease Inhibitor 189 250 IPR032675 -
Stsc90625g00028 1025 FunFam LRR receptor-like serine/threonine-protein kinase EFR 347 649 - -
Stsc90625g00028 1025 Pfam Leucine rich repeat N-terminal domain 35 76 IPR013210 -
Stsc90625g00028 1025 Pfam Protein tyrosine and serine/threonine kinase 716 940 IPR001245 GO:0004672|GO:0006468
Stsc90625g00028 1025 CDD STKc_IRAK 719 1011 - -
Stsc90625g00028 1025 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Stsc90625g00028 1025 SUPERFAMILY L domain-like 379 633 - -
Stsc90625g00028 1025 SMART serkin_6 713 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00028 1025 PANTHER UNNAMED PRODUCT 19 119 - -
Stsc90625g00028 1025 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 797 1020 - -
Stsc90625g00028 1025 ProSitePatterns Serine/Threonine protein kinases active-site signature. 849 861 IPR008271 GO:0004672|GO:0006468
Stsc90625g00028 1025 SUPERFAMILY L domain-like 35 336 - -
Stsc90625g00028 1025 Pfam Leucine Rich Repeat 574 594 IPR001611 GO:0005515
Stsc90625g00028 1025 Pfam Leucine Rich Repeat 325 347 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00028 Stsc-Chr90625 191453 194730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00028 34 1018 Receptor kinase-like Gene Family AT3G47570 45.775 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90625g00028 PK_Tyr_Ser-Thr 1.2e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00028 - - gmx:100792724 1240.71