Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00027 ATGAAGCCCTTCTCCCTTCTCTTATCCACATTATTTTGGTATCAATACACTATTGTCTTATCCCACGCATTATTGCTAGGAAATGAAACTGATCATTTGGCATTGCTCAACTTCAAGCAATCAATATCCAGTGACCCTTTTGGAATCTTGGATTCTTGGAATGATGCCTCTAACAACCACTTTTGCAATTGGCCAGGAATCACATGCAATAAGCAACAAAGGGTTATTGCTTTGAGATTACCAGGATATCATCTGCATGGACCTCTGTCACCTCAACTCAGCAATCTCTCTTTTTTGAGCTACATAGACCTCGAAAACAACACCTTCTATGGACATATTCCACAAGAATTTGGTCTTTTGAAACGCCTGCAAGTACTTTATCTTAATAACAATTCTCTGACAGGTGAATTTCCTATAAACTTGACAAGTTGTTCTCAACTCTCACACTTTGACTTCTCATGGAACAATTTGATTGGTAACATACCAATTCAAATTGGATCTCTTTCCAACCTCAAAGAATTTTTCATTGAGAGCAATAATTTCAGTGGAAGTATCCCACCCTCCATAGGTAATCTTACATCCCTCACTGCCCTAGTCTTGATTTATAATAACTTGGAGGGAAATATTCCACAAGAACTATGTTCCTTGAAAAACTTGACCTATCTATTACTCGATTCGAACAAATTTTCGGGTACACTTCCTTCTTGTCTTTACAAAAATATGTCATCTCTGAGTGTGTTGTCAATTGCTTACAATAACATCAATGGATCTTTGCCAGCCAACATGTTCCACAACCTCCCTAATCTTCAGTTCTTTCAAATTGGAACCAATAGTTTGTCAGGCACAATTCCAGTTTCTGTAGCAAATGCATCTTCAATATATGTACTTGATTTCACGAGAAACAAGTTTGTAGGACAAGTTCCAAGCTTAGGGAAGCTAACAAAACTCCGGTTTCTATCTGTATCTGAGAACAATCTAGGTGGAGTTCCAACTAAGGATTTGAAGTTCTTGAATTCATTGACAAACTGTAGTAACTTGTACATGCTTGGTATATCTGTCAATAACTTCGGAGGCCGGCTGCCAAATTACATTGGTAATTTGTCTACCCACTTAAGCAATCTCTATCTTGGTTATAACCAAATATTTGGAAAGATTCCTGCAGAGTTAGGAAATCTGGTTAACTTAACTCTCTTGACCATGTCACACTGCCGTTTTGATGGGAATATTCCTGCTACTTTTGGACAGTTTCAAAAGATTGGAGTATTAGAGTTGAATGAAAACAAGCTCTCAGGAGAGATTCCAGCCTTTATAGGCAACCTCAGCCAGTTGTATTTCTTGAATTTGGCAGACAACATGTTTGAAGGAAGCATTCCTTCAAGCATAGGAAACTCCCAGAGCTTACAACATCTTAATTTTTCCATGAACAATCTCACCGGAACCATACCATCTGAGATTTTCAGCATTTCTTCCTTGACAACCTTATTAGACTTGTCGCAAAACTCATTCAGTGGCAATCTATCTGATGAGGTGGGAAATCTAGAAAATCTCAATGTCCTTAAACTCTCTGACAATAATCTAGTTGGAAACATTCCTACTAGCATTGCAAAGTGCCTAAGTTTGGAGTTCCTTTATTTGCAAGGTAACTCATTCTCTGGAACCATATCATCCTCTTTGGTTTCGCTTAAAGGTCTTCGAGAATTAGACATATCGCGAAACCATTTTTCTGGGTCGATTCCGGAAGGCTTGCAGAACATTTCACTAGTGTATCTCAATATCTCTTTCAACATGTTGGATGGTCAAGTACCGACAGGAGGAGTTTTCAGAAATGTGAGTGAGTTTGCAATGATTGGAAACAATGAGCTTTGTGGGGGTGTTTCAGAGCTTCATTTACCACCATGTCCTTCTGAAGCTAAGAAACTTAAGAGACATCACAATTTCAGGTTGATTGCAGTGATAGTTTGTGTGTTTGCTTTTTTCTTCATCTTGTCCCTTTTCCTAACCATTTATTGGATGAGGAAGAGAAGCAGGAAAATGTTTTCTCATGATTCACATTCACCAGAAATTGACCAGCTTGCTAAGGTTTCATATCAAAGCCTTCACAATGGAACAAATGGATTCTCAGAAGAAAATCTGATAGGGTCTGGAAGTTTTGGCTCTGTATACAAAGGAACTCTTGAGTTAGAAGGAAGTGTTGTTGTTGTTGCCATAAAAGTCCTAAAGCTTCAAACGAAAGGTGCTGAAAAGAGTTTTGTTGCTGAATGTAATGCACTCAGGAATGTCAGGCATAGAAATCTGGTGAAGATTTTAACATGTTGCTCAGGTACAGATTATAAAGGGCAAGAGTTCAAGGCTCTAGTTTTTGAGTTCATGAGAAATGGAAGCCTAGAAAGTTGGTTACATCCACCATCAACAGGAATTGCAAATCACACTCTGAATCTTGAGCAAAGATTAAACATCATCAATGATGTGGCTTCAGCATTTCATTATCTTCACTATGAATGTGATTCAACTATTATCCATTGTGATTTGAAGCCAAGCAATGTTGTTCTGGATGATTTCATGGTAGCTCATGTAGCTGATTTTGGCTTAGCAAGACTAGTTGGGAAGAATATTATTGGAGAGTGTTCTATGCAAACAAGCTCAATTGGACTTGAAGGAACCTTTGGTTATGCTTCTCCAGAGTATGGAATGGGCTATCAAGTGTGTATGGAAGGAGATATTTATAGCTTCGGAATTCTGATATTAGAAATGGTGACTGGAAAGAGGCCTACGGATGAGATGTTTAAGGATGGTTACAATCTCCATAATTATGTTCAAGTTTCAATTTCAAGTAACATATTGCAGATTGTGGACCCTCGTATGCTTTATAGAAAAAAGGAAGTGCATCCTAGTGTTGATGATTGTTTGATTTCACTGCTCAGGATTGGACTCGCTTGTTCAATGGAATCACCAAATGAAAGAATGGATATGGTTGATGTCATGAGGGAGCTTAATCGAATCAGAAGTTGTTTTACTTCTGCTGAACTCAAGGAAGAAGCAGATTAG 3045 0.3819 MKPFSLLLSTLFWYQYTIVLSHALLLGNETDHLALLNFKQSISSDPFGILDSWNDASNNHFCNWPGITCNKQQRVIALRLPGYHLHGPLSPQLSNLSFLSYIDLENNTFYGHIPQEFGLLKRLQVLYLNNNSLTGEFPINLTSCSQLSHFDFSWNNLIGNIPIQIGSLSNLKEFFIESNNFSGSIPPSIGNLTSLTALVLIYNNLEGNIPQELCSLKNLTYLLLDSNKFSGTLPSCLYKNMSSLSVLSIAYNNINGSLPANMFHNLPNLQFFQIGTNSLSGTIPVSVANASSIYVLDFTRNKFVGQVPSLGKLTKLRFLSVSENNLGGVPTKDLKFLNSLTNCSNLYMLGISVNNFGGRLPNYIGNLSTHLSNLYLGYNQIFGKIPAELGNLVNLTLLTMSHCRFDGNIPATFGQFQKIGVLELNENKLSGEIPAFIGNLSQLYFLNLADNMFEGSIPSSIGNSQSLQHLNFSMNNLTGTIPSEIFSISSLTTLLDLSQNSFSGNLSDEVGNLENLNVLKLSDNNLVGNIPTSIAKCLSLEFLYLQGNSFSGTISSSLVSLKGLRELDISRNHFSGSIPEGLQNISLVYLNISFNMLDGQVPTGGVFRNVSEFAMIGNNELCGGVSELHLPPCPSEAKKLKRHHNFRLIAVIVCVFAFFFILSLFLTIYWMRKRSRKMFSHDSHSPEIDQLAKVSYQSLHNGTNGFSEENLIGSGSFGSVYKGTLELEGSVVVVAIKVLKLQTKGAEKSFVAECNALRNVRHRNLVKILTCCSGTDYKGQEFKALVFEFMRNGSLESWLHPPSTGIANHTLNLEQRLNIINDVASAFHYLHYECDSTIIHCDLKPSNVVLDDFMVAHVADFGLARLVGKNIIGECSMQTSSIGLEGTFGYASPEYGMGYQVCMEGDIYSFGILILEMVTGKRPTDEMFKDGYNLHNYVQVSISSNILQIVDPRMLYRKKEVHPSVDDCLISLLRIGLACSMESPNERMDMVDVMRELNRIRSCFTSAELKEEAD 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00027 1014 Gene3D Ribonuclease Inhibitor 27 178 IPR032675 -
Stsc90625g00027 1014 Gene3D Ribonuclease Inhibitor 179 241 IPR032675 -
Stsc90625g00027 1014 SUPERFAMILY L domain-like 29 326 - -
Stsc90625g00027 1014 Gene3D Transferase(Phosphotransferase) domain 1 790 1012 - -
Stsc90625g00027 1014 Gene3D Ribonuclease Inhibitor 242 334 IPR032675 -
Stsc90625g00027 1014 PANTHER LEUCINE RICH REPEAT KINASE 2 339 1005 - -
Stsc90625g00027 1014 Gene3D Phosphorylase Kinase; domain 1 687 789 - -
Stsc90625g00027 1014 ProSitePatterns Protein kinases ATP-binding region signature. 712 737 IPR017441 GO:0005524
Stsc90625g00027 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 677 789 - -
Stsc90625g00027 1014 ProSiteProfiles Protein kinase domain profile. 706 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00027 1014 SMART LRR_typ_2 241 265 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 313 336 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 561 584 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 120 144 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 216 240 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 440 464 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 513 537 IPR003591 -
Stsc90625g00027 1014 SMART LRR_typ_2 168 192 IPR003591 -
Stsc90625g00027 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 790 1010 - -
Stsc90625g00027 1014 Gene3D Ribonuclease Inhibitor 335 635 IPR032675 -
Stsc90625g00027 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 337 639 - -
Stsc90625g00027 1014 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 68 336 - -
Stsc90625g00027 1014 SUPERFAMILY L domain-like 370 623 - -
Stsc90625g00027 1014 Pfam Leucine Rich Repeat 564 584 IPR001611 GO:0005515
Stsc90625g00027 1014 SUPERFAMILY Protein kinase-like (PK-like) 682 997 IPR011009 -
Stsc90625g00027 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 838 850 IPR008271 GO:0004672|GO:0006468
Stsc90625g00027 1014 SMART serkin_6 706 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00027 1014 Pfam Protein tyrosine and serine/threonine kinase 709 996 IPR001245 GO:0004672|GO:0006468
Stsc90625g00027 1014 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00027 Stsc-Chr90625 184823 188107 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00027 28 1007 Receptor kinase-like Gene Family AT3G47570 45.253 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90625g00027 PK_Tyr_Ser-Thr 4.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00027 - - gmx:100792724 1207.97