Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00026 ATGAAGCCTTTCTCTCTTGTCTTATCCACATTATTATTTTGGTACTTCTCAAACACTAGTTGTAGTGTCCACGCATTATTGCTAGGAAATGAAACTGATCATTTGGCATTGCTGAAGTTCAAGGAATCAATATCCAGTGACCCTTTTGGAATCTTGGATTCTTGGAATGATACCTCTAACAACCACTTCTGTATGTGGCATGGAATCACATGCAACAATAGAGCCAATAAGCAACAAAAGGTTATTGGTTTGAACTTATCAGGATATCATCTGCATGGATCTCTGTCTCCTCAACTCAGCAATCTCTCTTTTCTGAAGTTTATAGACCTCGAAAACAACACCTTCTATGGAGATATCCCACAAGAACTTGGTCGCTTGAAACGCCTGCAAGTACTTTATCTTAATAATAATTCTCTGACAGGTGAAATTCCTATAAACTTAACCACTTGTTCTCAACTCACAAACTTACACTTGTCATGGAACAAGTTGATTGGTAAAATACCAATTGAAATTGGATCTCTTTCCAAGCTCCAAGAATTGTTCATTTCGAGCAATAGTTTGAGAGGAAGAATCCCACCATCCATAGGTAATCTTACATCCCTAACTCACCTAAAGTTGGTTTTTAATAACTTGGAGGGCAAGATTCCTCAAGAATTATGTGCCTTGCAAAACTTGTCGAATTTATTACTTGATTCGAACAAGCTTTCGGGCACACTTCCTTCTTGTCTTTACAAAAATGTATCATCTCTGAGTGCCTTGTCAATTGCATACAATAACATCAATGGCTCTTTGCCAGCCAACATGTTCCACAACCTCCCCAATCTTCAATTCTTTCAAATTGCAAGTAATCATTTCTCAGGCACAATTCCAATTTCTGTAGCAAATGCATCTTTACTAGAGATACTTGATTTCGCGAAAAACAAGTTTGTGGGACAAGTTCCAAGCCTAGGGAAGCTAACAAAACTCCAATTTCTATCTGTATCTGAGAACACTCTAGGTGGAGTTCCAGCCAAGGATTTGAAGTTCTTGAATTCATTGACAAACTGTAGTAACTTGTACATGCTCAGTATATCTGTCAATAACTTTGGAGGCCAGCTTCCAAATTACATTGGCAATTTGTCTACACACCTAAGAAATCTCTATCTTGGTTATAACCAAATATATGGAAAGATTCCTGCAGAGTTAGGAAATCTGGTTAACTTAACTCTCTTGAACATGCAACACTGCCGTTTCGATGGGAATATTCCGGCTACTTTTGGACAGTTTCAGAAGATGGAATCATTAGAGTTGAGTGGAAACAAGTTCTCAGGAGAGATTCCAGCTTTTATAGGCAACCTCAGCCAAATGTATTTCTTGAATTTGGCAGACAATATGTTTGAAGGAAGCATTCCTTCAAGCATAGCAAACTGCCAGAAGTTACAACATCTTGATTTTTACAAGAACAATCTCAATGGAACCATACCATCTGAGATTTTCAGCATTTCTTCCTTCACAACCTTATTAGACTTGTCACAAAACTTATTCAGTGGAAATCTATCTGATGAGGTGGGAAAGCTAAAAAATCTCAATTACCTGACAGTATCTGAGAATAATCTAGTTGGCAACATTCCTGCCAGCATTGGAGAGTGCCTAAGTTTGGAGTTCCTTGAATTGCAAGGCAATTTGTTCTCCGGAACCATACCATCCTCTCTGGTTTCGCTAAAAGGTCTTCGAGGATTAGACATATCGCGAAACCATTTGTCCGGCTCAATTCCTGAAGGCTTGCAGAACATTTCACTAGACTATCTTGATATCTCTTTCAACATGTTGGATGGTCAAGTACCGACTGGAGGAGTTTTCGGAAATGTGAGTGAGTTTGCAATGATTGGAAACAATAAGCTTTGTGGGGGTGTTTCAGAGCTTCATTTGCCACCATGCCCTTCTAAGAGACACCGCAATTTCAGGTTGATTGTAGTGGTATTTTGTGTGTGTGCTTTTTTGTTCTTCTTATCTCTTTTCCTAACCATTTATTGGATGAGGAAGAGAAGCAAGAAAATATCTTCAGATGGTTCACCAACAATTAACCAGCTTGCTAAAGTTTCATATCAAAGCCTATACAATGGAACAAATGGATTCTCAGAAGAAAATCTGATAGGATCTGGAAGTTTTGGCTCTGTATACAAGGGAACTCTTGAGTTAGAAGGAAGTGTTGTTATTGTTGCCATAAAGATTATAAAGGGCAAGAGTTCAAGGCTTTGGTTACATCCACCATCAACAGGAATTGCAAATCACACTCTGAATCTTGAGCAAAGGTTAAACATCATCAATGATGTGGCTTCAGCATTTCATTATCTTCACTATGAATGTGATCCAACCATTATTCATTGTGATTTAAAGCCAAGCAATGTTGTTCTGGATGATTTCATGGTAGCTCATGTAGCTGATTTTGGCTTAGCAAGACTAGTTGGGAAGTATATTGGAGAGTGTTCTATGCAAACAAGCTCAGTTGGACTTAAAGGAACTTTTGGTTATGCTCCTCCAGAATATGGAATGGGCTATCAAGTGTGTATGGAAGGAGATATGTATAGCTTTGGGATTCTGATATTAGAAATGGTGACCGGAAAGAGGCCCACGGATGAGATGTTCAAGGATGGTTACAATCTCCATAATTATGTTCAAGTTTCAATTTCAAGTAACATATTGCAGATTGTGGATCCTGGTGTCCTTTCCAAGGGAAATCATCAACTGCATCCTGGTGTTGAAAGCTGTTTAGTTTCACTGCTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAATGAAAGAATGGCCATGGTTGATGTCATGAGAGAGCTTAATCGAATCAAAAGTTATTTTCCATCCTCTGAACTCATGGAAGAAGCAGATTAG 2889 0.3859 MKPFSLVLSTLLFWYFSNTSCSVHALLLGNETDHLALLKFKESISSDPFGILDSWNDTSNNHFCMWHGITCNNRANKQQKVIGLNLSGYHLHGSLSPQLSNLSFLKFIDLENNTFYGDIPQELGRLKRLQVLYLNNNSLTGEIPINLTTCSQLTNLHLSWNKLIGKIPIEIGSLSKLQELFISSNSLRGRIPPSIGNLTSLTHLKLVFNNLEGKIPQELCALQNLSNLLLDSNKLSGTLPSCLYKNVSSLSALSIAYNNINGSLPANMFHNLPNLQFFQIASNHFSGTIPISVANASLLEILDFAKNKFVGQVPSLGKLTKLQFLSVSENTLGGVPAKDLKFLNSLTNCSNLYMLSISVNNFGGQLPNYIGNLSTHLRNLYLGYNQIYGKIPAELGNLVNLTLLNMQHCRFDGNIPATFGQFQKMESLELSGNKFSGEIPAFIGNLSQMYFLNLADNMFEGSIPSSIANCQKLQHLDFYKNNLNGTIPSEIFSISSFTTLLDLSQNLFSGNLSDEVGKLKNLNYLTVSENNLVGNIPASIGECLSLEFLELQGNLFSGTIPSSLVSLKGLRGLDISRNHLSGSIPEGLQNISLDYLDISFNMLDGQVPTGGVFGNVSEFAMIGNNKLCGGVSELHLPPCPSKRHRNFRLIVVVFCVCAFLFFLSLFLTIYWMRKRSKKISSDGSPTINQLAKVSYQSLYNGTNGFSEENLIGSGSFGSVYKGTLELEGSVVIVAIKIIKGKSSRLWLHPPSTGIANHTLNLEQRLNIINDVASAFHYLHYECDPTIIHCDLKPSNVVLDDFMVAHVADFGLARLVGKYIGECSMQTSSVGLKGTFGYAPPEYGMGYQVCMEGDMYSFGILILEMVTGKRPTDEMFKDGYNLHNYVQVSISSNILQIVDPGVLSKGNHQLHPGVESCLVSLLRIGLACSVESPNERMAMVDVMRELNRIKSYFPSSELMEEAD 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00026 962 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 738 957 - -
Stsc90625g00026 962 Pfam Protein kinase domain 759 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00026 962 Gene3D Ribonuclease Inhibitor 29 185 IPR032675 -
Stsc90625g00026 962 Gene3D Ribonuclease Inhibitor 186 248 IPR032675 -
Stsc90625g00026 962 PANTHER UNNAMED PRODUCT 14 115 - -
Stsc90625g00026 962 SUPERFAMILY L domain-like 31 332 - -
Stsc90625g00026 962 Gene3D Ribonuclease Inhibitor 249 641 IPR032675 -
Stsc90625g00026 962 ProSiteProfiles Protein kinase domain profile. 602 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00026 962 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 75 342 - -
Stsc90625g00026 962 SMART serkin_6 705 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90625g00026 962 Gene3D Phosphorylase Kinase; domain 1 668 746 - -
Stsc90625g00026 962 Pfam Leucine Rich Repeat 176 198 IPR001611 GO:0005515
Stsc90625g00026 962 Pfam Leucine rich repeat N-terminal domain 31 72 IPR013210 -
Stsc90625g00026 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 786 798 IPR008271 GO:0004672|GO:0006468
Stsc90625g00026 962 ProSitePatterns Protein kinases ATP-binding region signature. 711 736 IPR017441 GO:0005524
Stsc90625g00026 962 SUPERFAMILY Protein kinase-like (PK-like) 687 945 IPR011009 -
Stsc90625g00026 962 FunFam LRR receptor-like serine/threonine-protein kinase EFR 343 645 - -
Stsc90625g00026 962 SUPERFAMILY L domain-like 346 608 - -
Stsc90625g00026 962 Gene3D Transferase(Phosphotransferase) domain 1 747 958 - -
Stsc90625g00026 962 SMART LRR_typ_2 126 150 IPR003591 -
Stsc90625g00026 962 SMART LRR_typ_2 519 543 IPR003591 -
Stsc90625g00026 962 SMART LRR_typ_2 319 342 IPR003591 -
Stsc90625g00026 962 SMART LRR_typ_2 174 198 IPR003591 -
Stsc90625g00026 962 SMART LRR_typ_2 222 246 IPR003591 -
Stsc90625g00026 962 SMART LRR_typ_2 247 271 IPR003591 -
Stsc90625g00026 962 SMART LRR_typ_2 567 590 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00026 Stsc-Chr90625 179136 182232 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00026 30 952 Receptor kinase-like Gene Family AT3G47570 42.063 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc90625g00026 Pkinase 7.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00026 - - gmx:100792724 1097.8