Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00025 ATGAAATCCATTAAAGATGATGCTTCCGCACAAGATCTCGATCCTCAAAGCGACCATAGCTCCGATTACCTTCTTAATTCCAACCCTCAGCCCCGCCGTCCCCGCGGCTTTGCCGCCTCCGCCGCCGCCGTCAATTCCCCCGCCAAAGCCAAGAAGGAGAGGGAGAAGGAGAAGGAGCGCACCAAGCTCCGCGAGCGTCACCGCCGTGCCATCACTAGCCGTATGCTTGCCGGTCTCCGCCAGTACGGTAACTTCCCTCTTCCGGCGCGTGCGGACATGAACGACGTACTCGCTGCACTCGCGCGTGAGGCAGGTTGGGTTGTTGAAGCTGATGGCACCACCTACCGCCGGTGCCCTCCCCCTTCTCACGTGGGTTCTTTTGGTGCTAGGTCAGTTGAAAGTCAACTCTCTGGTGGTTCTTTGAGACCTTGCTCTGTTAAAGATACACTAGGGAATCAGCCACCGGCGCTTACAATCGATGAATGCTTGTCGCCTGCATCCATTGATTCTGTGGTAATTGCAGAAAGGGACTTGAAGAATGAGAAATTCTCAAGTTCAAGCCCTGTAAATCCAGTCCACTGCCTCGAGGCCGATCAGCTCATACATGATATTCATTCTGGTGTGCACGAGAATGAGNNNNNNNNNNGCACGCCATACATTCCGGTTTACTCAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCCGAAAGCATTAGACAGGAGCTAATCCATCTTAAGTCTTTAAATATGGACGGCGTCATTGTGGATTGTTGGTGGGGTATTGTTGAAGGCTGGAGTCCGCAGAAATATGTATGGTCTGGCTATAGGGATCTTTTTAACATTATTAGAGAATTTAAGCTGAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGGAATGATTCTAGTGATGCTTTGATTGCCCTGCCACAATGGGTTTTGGATATGGGAAAAGATAACCCAGATATATTCTTTACAGATCGTGAAGGGCGGAGGAATACTGAATGCCTTTCCTGGGGAGTTGACAAAGAGCGGGTTCTGAAAGGAAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTCCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCTGTAGAAATTGGACTTGGTGCATCTGGTGAGCTGAAATACCCTTCTTTTTCAGAAAGGATGGGATGGAGGTATCCTGGAATAGGCGAGTTTCAGTGCTATGATAAGTACCTGCAACATAGTCTATCCATGGCAGCCAAATTACGTGGTCATTCTTTCTGGGGTAGAGGACCTGATAATGCTGGACACTACAACTCTATGCCACATGAAACTGGATTCTTTTGTGAACGAGGTGATTATGACAACTATTATGGACGCTTCTTCTTGCATTGGTATTCGCAGACATTAATAGACCATGCAGATAATGTTCTGTCCCTTGCTAGCCTTGCTTTTGAGGATACCAAATTAGTTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGTTGACGGCCGGATATCACAACCCCACAAATCAGGATGGATACTCTCCTGTGTTTGAGATGTTGAGAAAACATTCCGTCACCATGAAATTTGTCTGCCTAGGATTCCATCTTTCTAGCCAGGAAGCTAACGAATCATTAATTGATCCTGAGAGTTTAAGTTGGCAGGTACTAAACTCAGCCTGGGATAGAGGTTTGGTTGCTGCTGGAGAGAATGCTCTCCTTTGCTACGATAGAGAAGGTTACAAGAGATTGGTTGAGATGGCCAAGCCCAACAATGATCCAGATCGCCGACACTTCTCATTCTTTGTTTTCCAACAACCCTCTGTCCTTCAAGGAAATGTTTGCTTGTCAGAATTGGATTTCTTTGTTAAATCCATGCACGGTGAGTTGACAGGAGCCATATAA 1959 0.464 MKSIKDDASAQDLDPQSDHSSDYLLNSNPQPRRPRGFAASAAAVNSPAKAKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVEADGTTYRRCPPPSHVGSFGARSVESQLSGGSLRPCSVKDTLGNQPPALTIDECLSPASIDSVVIAERDLKNEKFSSSSPVNPVHCLEADQLIHDIHSGVHENEXXXXTPYIPVYSKLPAGIINKFCQLIDPESIRQELIHLKSLNMDGVIVDCWWGIVEGWSPQKYVWSGYRDLFNIIREFKLKLQVVMAFHECGGNDSSDALIALPQWVLDMGKDNPDIFFTDREGRRNTECLSWGVDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLSMAAKLRGHSFWGRGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEDTKLVVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEMLRKHSVTMKFVCLGFHLSSQEANESLIDPESLSWQVLNSAWDRGLVAAGENALLCYDREGYKRLVEMAKPNNDPDRRHFSFFVFQQPSVLQGNVCLSELDFFVKSMHGELTGAI 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 514 525 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 570 592 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 463 482 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 254 268 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 532 555 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 390 412 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 497 513 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 297 318 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 275 293 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 SUPERFAMILY (Trans)glycosidases 217 647 IPR017853 -
Stsc90625g00025 652 MobiDBLite consensus disorder prediction 1 64 - -
Stsc90625g00025 652 MobiDBLite consensus disorder prediction 48 64 - -
Stsc90625g00025 652 MobiDBLite consensus disorder prediction 14 28 - -
Stsc90625g00025 652 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 160 646 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 Pfam BES1/BZR1 plant transcription factor, N-terminal 49 195 IPR008540 -
Stsc90625g00025 652 Pfam Glycosyl hydrolase family 14 237 611 IPR001554 GO:0000272|GO:0016161
Stsc90625g00025 652 Gene3D Glycosidases 210 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00025 Stsc-Chr90625 173555 178157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00025 12 648 Glycoside Hydrolase AT5G45300 64.030 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Stsc90625g00025 Glyco_hydro_14 6.8e-88 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00025 K01177 - gmx:100777004 1174.07