Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90625g00007 ATGTTTGATGAACCCTCTAGTTACCTTGATGTGAAGCAGAGGCTGAAAGCTGCTCAAGTTATTCGGTCATTACTCAGGCCTAATAGCTATGTAATTGTTGTGGAGCATGATCTTAGTGTCTTGGACTACTTGTCTGACTTCATTTGCTGTTTATATGGCAAACCTGGTGCATATGGAGTTGTAACACTACCTTTCTCAGTCAGAGAAGGAATTAATATCTTCTTGGCGGGTTTTGTTCCTACAGAAAATCTTAGGTTCCGTGATGACTCTCTTACCTTCAAGGTTGCTGAGACTCCACAGGAAACTGCTGAGGAGGCTCAGTCATATGCTCGCTACAAATATCCAACCATGACCAAAACTCAAGGCAATTTCAAGCTTCGTGTTGTTGAGGGGGAATTCACTGATTCTCAGATTGTTGTGATGCTGGGAGAGAATGGAACTGGAAAGACAACATTTATTCGAATGCTGGCTGGTTTGTTGAAACCTGACACAATAGAAGGTGGATCTGACGCAGAGATGCCTGAGTTTAATGTTTCTTACAAGCCTCAGAAGATTAGCCCAAAGTTCCAGTCAACTGTTAGAAACTTGCTGCATCAGAAGATACGTGATGCATACACTCATCCCCAGTTTATATCAGATGTCATGAAGCCACTTCTTATTGAACAATTGATGGACCAAGAGGTTGTGAATCTTTCTGGGGGAGAGCTGCAAAGAGTCGCATTATGTCTTTGTCTTGGAAAGCCTGCAGACATCTATTTGATAGATGAGCCAAGTGCATATCTTGACTCTGAACAGCGAATTCATGCTGCCAAAGTCATCAAGAGGTTTATCCTTCATGCGAAGAAAACAGCTTTTGTGGTTGAGCACGATTTCATTATGGCAACTTATCTTGCTGATAGAGTAATTGTTTACGAGGGTAAACCATCGCTTGATTGTACTGCAAATTCTCCGCAATCATTGTTGACTGGCATGAACCTTTTCTTGTCGCATCTCGATATCACATTTAGAAGGGACCCTACCAATTATCGTCCTAGGATCAACAAACTCGATTCGACCAAGGACAGAGAACAAAAGAATGCCGGGTCGTACTATTACCTAGACGATTGA 1107 0.4219 MFDEPSSYLDVKQRLKAAQVIRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQETAEEAQSYARYKYPTMTKTQGNFKLRVVEGEFTDSQIVVMLGENGTGKTTFIRMLAGLLKPDTIEGGSDAEMPEFNVSYKPQKISPKFQSTVRNLLHQKIRDAYTHPQFISDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYEGKPSLDCTANSPQSLLTGMNLFLSHLDITFRRDPTNYRPRINKLDSTKDREQKNAGSYYYLDD 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90625g00007 368 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 110 331 IPR003439 GO:0005524
Stsc90625g00007 368 SMART AAA_5 135 309 IPR003593 GO:0016887
Stsc90625g00007 368 Gene3D - 1 94 IPR027417 -
Stsc90625g00007 368 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 368 IPR013283 -
Stsc90625g00007 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 53 IPR027417 -
Stsc90625g00007 368 Gene3D - 97 366 IPR027417 -
Stsc90625g00007 368 CDD ABC_RNaseL_inhibitor_domain2 112 361 - -
Stsc90625g00007 368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 304 IPR027417 -
Stsc90625g00007 368 ProSitePatterns ABC transporters family signature. 231 245 IPR017871 GO:0005524|GO:0016887
Stsc90625g00007 368 Pfam ABC transporter 129 259 IPR003439 GO:0005524
Stsc90625g00007 368 FunFam ATP-binding cassette sub-family E member 1 97 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90625g00007 Stsc-Chr90625 30381 32416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90625g00007 112 289 Calmodulin-binding Proteins AT2G36910 22.959 4.17e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90625g00007 K06174 - gmx:100797423 703.745