Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90624g00024 ATGGTTATTGGAATAAGGTTGTTTCTGTTCATGCTTGCTTTGTGTTTGTGGATATTTCCCAATGAAGGAGTGGGAAGAACAGGGCCTTCACCTAATAATACCACTGTGAATTCCACTGTTTCTTCTTCAAGACCAAAGGTTGTGAAGATTGGAGTCTTGTTTACTTTGAATTCCTCCCTTGGAAAATCTGTTAAACCTGCTGTTATGGCTGCCATAGAAGATGTTAACTCCAATAGAAGCATTCTCCGCGGCATTCAGCTTCAGGCCATTTTTCACGACACAAATTGCAACGGGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTCGTCGCCACTATCGGACCACAGTCTTCTTCAATAGCTCATGTCATCTCTCATGTGTCTAATGAACTTCATGTACCTCTTCTATCATTTGCTGCAACTGATGCTACTCTATCTGCACTTCAGTATCCCTATTTTGTCCGCACCACACACAGTGACTACCATCAGATGTATGCAATTGCAGACTTTGTTGAATATTGCAGATGGAGGGAAGTAATTGCCATTTTTGTAGATGATGAGTATGGAAGGAATGGAATTTCTGTGCTCGGTGATGCATTGTCATCGAAGCGTGCCAAGGTCTCTTATAAGGCTGCTCTCCCTCCTGGTGCCAACACAAGTGATGTCAGTGACTTGTTGAGTGAAGTGAACTTAATGGAATCAAGAGTCTATGTTCTGCATGTTAATCCTGGTTCTGGTTTGTCTATCCTTGGTGTCGCGAAGCAGCTAGGAATGATGAGCAATGGCTATGTTTGGATTGCAACAGATTGGCTTCCTTCGGTTCTGGATTCGTCCAACACACCGGACTCTAACACAATGAGTGCTCTGGAAGGTGTTGTGGCTTTCCGCAATCACATTCCTGATACTGATATCAAGAAGAGTTTGCTTGCTAAGTTGAAAAGCCAGAAGGACAAGGAGACTTCTAGTTTCAATTCCTATGCATTCTATGCATATGATTCTGTATGGATAGCAGCTCGTGCGCTTGATATTTTTCTCAATGAAGGTGGAAACATATCTTTCTCCAGTGACCCTAGATTGCAGGACAATAATGGAAGCACCTTACATTTAGGACTGCTTCGCACTTTTGATGGCGGCCCTCAGTATCTGCAAACTATTTTGAGGACAAACTTCACTGGTGTGAGTGGTCAAGTTGGGTTTGACAGAGATAGGAATTTAATCCATCCGGCCTATGATATTCTGAATATTGTTGGATCCGGATTGCATAGAATTGGTTACTGGTCTAATCACTCTAGTTTGTCAGTTGTAGCTCCTGATATTTCATATGTGAAATCATCTAACAACTCTTCTATAAGCACTCCACAGCTTTATAGTGTCATATGGCCGGGAGATGCTAAAACTACACCGAAAGGATGGGTATTCCCAAACAATGGAAAGCCATTGCGAATAGCAGTGCCGAATCGAGTAAGCTACAAGGAGTTTGTTTCCAAAGACAATAGTCCTACAGGAGTACAAGGCTACTGCATTGATGTCTTTGAAGCGGCTTTGAACTTGTTGGCTTATCCTGTCCCGCGACAGTATATATTGTATGGAAATGGTGAAAGGAATCCTGATTACAACAATCTTGTAGATCAAGTTGCACAAAATAACTTTGATGCAGCTGTTGGGGATGTTACAATTGTGATGAACAGAACAAGGTTTGTGGATTTTACTCAGCCTTTCATGGAATCAGGGCTTGTTGTTGTTGTTGCTGTCAAGGAGGAGAAGTCAAGCCCCTGGTCTTTCCTTAAGCCATTCACAGCTCAAATGTGGTGTGTTACTGGTGCTTTCTTTCTTTTTGTGGGAACCGTTGTGTGGATCCTTGAGCACCGGCTCAATCACGAGTTCCGCGGTCCACCAAGGAAGCAAATTATAACAGTCTTCTGGTTTAGTCTGTCAACAATGTTTTTCTCACACAGAGAGAACACTGTGAGTGCTCTTGGGAGATTGGTGCTAATCATATGGCTATTTGTGGTGTTGATTATCAACTCAAGCTACACAGCTAGCTTGACATCAATCCTCACCGTGCAGCAGTTGTCATCACAGATTGAAGGAATTGATAGCTTGATCTCTAGTAGTCAACCAATCGGAATTCAAGACGGGTCATTCGCAAAGAAGTATCTGACAGATGAACTCAACATAGCAGAATCTAGAATAGTTACATTGAAAAACATGGAGGCTTATATCGATGCTCTTCAGCGCGGGCCGAGAAATGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTATATTGATATCTTGATGGCCAATACCGACTGCAAGTTTAGAACTGCATTCCAGAGGGACTCTGCCCTCGCTGTCGACATGTCAACTGCGATTCTTGAACTCTCGGAAAACGGGGACCTGCAGAAGATCCATGACAAATGGCTTAACAAGAAGGAATGTGCAAGCAATGATGATGATCCAAACAAACTATCATTGAAAAGCTTCTGGGGCCTCTTCCTTGTGTGTGGCATTATTTGTGTCCTTGCACTGATTGTGTTCTTCACCAGAGTGTTGTGTCAGTACACAAAGTTGATGCCAGAGGACGGGGAGGCTGACGAGGAGATTGAACAGCCGGTCCGACGGCGGAGAAGGGCAACCAAAACTCCTAGCTTCAAGGAATTGATTGTTTTTGTAGATAAAAAGGAAGCAGAAATCAAAGAGATACTTAGACAGAAGAATAGAAAAAGGCAACGCAGCACAAGCTTAGATGATAACTCCAATTCACCAATCTAA 2787 0.4306 MVIGIRLFLFMLALCLWIFPNEGVGRTGPSPNNTTVNSTVSSSRPKVVKIGVLFTLNSSLGKSVKPAVMAAIEDVNSNRSILRGIQLQAIFHDTNCNGFLGTMEALQLMENDVVATIGPQSSSIAHVISHVSNELHVPLLSFAATDATLSALQYPYFVRTTHSDYHQMYAIADFVEYCRWREVIAIFVDDEYGRNGISVLGDALSSKRAKVSYKAALPPGANTSDVSDLLSEVNLMESRVYVLHVNPGSGLSILGVAKQLGMMSNGYVWIATDWLPSVLDSSNTPDSNTMSALEGVVAFRNHIPDTDIKKSLLAKLKSQKDKETSSFNSYAFYAYDSVWIAARALDIFLNEGGNISFSSDPRLQDNNGSTLHLGLLRTFDGGPQYLQTILRTNFTGVSGQVGFDRDRNLIHPAYDILNIVGSGLHRIGYWSNHSSLSVVAPDISYVKSSNNSSISTPQLYSVIWPGDAKTTPKGWVFPNNGKPLRIAVPNRVSYKEFVSKDNSPTGVQGYCIDVFEAALNLLAYPVPRQYILYGNGERNPDYNNLVDQVAQNNFDAAVGDVTIVMNRTRFVDFTQPFMESGLVVVVAVKEEKSSPWSFLKPFTAQMWCVTGAFFLFVGTVVWILEHRLNHEFRGPPRKQIITVFWFSLSTMFFSHRENTVSALGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSSQPIGIQDGSFAKKYLTDELNIAESRIVTLKNMEAYIDALQRGPRNGGVVAVVDELPYIDILMANTDCKFRTAFQRDSALAVDMSTAILELSENGDLQKIHDKWLNKKECASNDDDPNKLSLKSFWGLFLVCGIICVLALIVFFTRVLCQYTKLMPEDGEADEEIEQPVRRRRRATKTPSFKELIVFVDKKEAEIKEILRQKNRKRQRSTSLDDNSNSPI 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90624g00024 928 Pfam Ligand-gated ion channel 815 842 IPR001320 GO:0015276|GO:0016020
Stsc90624g00024 928 PIRSF IGluLR_plant 5 927 IPR017103 -
Stsc90624g00024 928 Gene3D - 67 411 - -
Stsc90624g00024 928 SMART GluR_14 485 815 IPR001320 GO:0015276|GO:0016020
Stsc90624g00024 928 CDD PBP1_GABAb_receptor_plant 49 440 IPR044440 -
Stsc90624g00024 928 Gene3D - 163 435 - -
Stsc90624g00024 928 Gene3D - 479 594 - -
Stsc90624g00024 928 Gene3D - 595 716 - -
Stsc90624g00024 928 Gene3D - 762 820 - -
Stsc90624g00024 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 334 346 - -
Stsc90624g00024 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 61 77 - -
Stsc90624g00024 928 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 121 149 - -
Stsc90624g00024 928 FunFam Glutamate receptor 163 323 - -
Stsc90624g00024 928 Pfam Bacterial extracellular solute-binding proteins, family 3 494 814 IPR001638 -
Stsc90624g00024 928 FunFam Glutamate receptor 479 595 - -
Stsc90624g00024 928 Coils Coil 896 916 - -
Stsc90624g00024 928 FunFam Glutamate receptor 595 725 - -
Stsc90624g00024 928 SUPERFAMILY Periplasmic binding protein-like II 460 815 - -
Stsc90624g00024 928 FunFam Glutamate receptor 780 812 - -
Stsc90624g00024 928 Pfam Receptor family ligand binding region 64 421 IPR001828 -
Stsc90624g00024 928 SUPERFAMILY Periplasmic binding protein-like I 42 476 IPR028082 -
Stsc90624g00024 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 880 IPR015683 -
Stsc90624g00024 928 MobiDBLite consensus disorder prediction 907 928 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90624g00024 Stsc-Chr90624 206655 210663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90624g00024 44 783 Ion Channels AT1G05200 64.865 0.0 1036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90624g00024 K05387 - gmx:100802782 1355.12