Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90623g00042 ATGGCATATGAAGGAGATGCCAAAGTCTTCAATGGCTCCATAGAACTCAACACACATGACTACTATCGAGTCGGACGAGCCATTTACAGCCAGCCATTGCACCTTTGGGATTCATCCACCAAGGTTGTCACAGACTTCACAACATCTTTTACATTCACCATTGAAGGATCTGAATCCAATGGTAGTAATGTGCTTGCTGATGGCTTTGTCTTCCACATGGCTCCTATGAGTTTCACAATTCCACCCAACTCAGCTGGTGGCAATTTTGGACTATTCAACAGTTCCACACTTTATGGGATACCCCAAAATCAGATTTTTATGGTGGAATTTGACACATTCCAAAATGATGAGTATGATCCACTAGATCTAGAGCAACATGTTGGGATCAACAAAAATTCCCTCATATCAGTCAATTATACTAAGTTTGATATTGAAGAAAACAATGGGAAACAAGGCCATGCTTTAATTACCTATAATTCTTCAACCAAGAGCCTTGTTGTGTCTTGGTCTTTCAATGAAACTATCACCCATACTCTGTCTTGTGAGACTGACCTCTCTGAAATCCTACCGGAGTATGTGATAGCTGGATTCTCAGCTGGAACCGGCGGCTCGACCTCACAACATAATATTCATTCTTGGGAATTCAACTCGACTCTGGATTCCACCGGTTCTGGGGTAAACAGAAAGAAGAGGCAAAAAAGGGTCATAGAAATCGTTGCACTGACTTGCTCAGTAATTGTATTGGTGATTATGGTATGTGTTTCTTGTTCATTCACAATCATCAAGAAAAGAATTCCCAAGCTCCAGCATGATGATGGCAACCACAGACACACAGTATTGGTCACCAGTGACTTGGAGAAAGCATCAATACCCAGAAAATTCAAGTACAAAGAATTAGTTCTAGCCACCAATGATTTCTCAGATGATACAAGGCTTGGAAGTGGAGGATCTAGTCAAGTTTACAAAGGTTTTCTAAGTCACCTAGGCTGTGTGGTCGCAGTGAAGAAGATTTCCATTGATATTCAAGGAGGTGAGAAAATGTTCATCAATGAGGTGAAGATAATAAGCCGCCTTATGCATAGAAATTTGGTGCGATTCATAGGGTGGTGCTGCCACAACAAACGAGAGTTCTTCCTGGTTTTCGAGTACATGCCTAACGGAAGCCTGGACAGTCATCTCTTTGGGAATAGAAGAGCTTTGCCTTGGGATGCAAGGTATAAGATAGCTTTAGAATTGGTGGACCCAAGATTGAAGACTCAAATGACTGGAGTTGCAGGGACATATGGGTACTTGGCTCCAGAATATCTCAATGGAGGAAGGGCTAGCAAAGAATCAGACATATATAGTTTCGGGATTGTAGCTTTGGAAATTGCATGTGGAAGGAAGAGTTACCAAGATGGAGAATATCATATTCCTCTAGTAAATTGGATATGGCAACTATATCTGGAAGGGAACATTCTGAATGGTGCTGATGAGAGTTTGAACAAGAATTTTGATGAAGCTCAAATGACATGCTTGCTTGTAGTGGGACTATGGTGTACCAACCCAAAGGAGAGGGAAAGGCCGAAAGCAGCACAAGTGATCAAGGTTCTTCAACTTGAATCGCCGCTACCTGCGCTTCCACAAGATATGCATGATCATCCTTTTCAACCAACCATGGTGACGTCTAGAGATTCTTTTCAATCATCACCCATCACCAATAGCCTTGTTAATGATGGACGTTAG 1725 0.4191 MAYEGDAKVFNGSIELNTHDYYRVGRAIYSQPLHLWDSSTKVVTDFTTSFTFTIEGSESNGSNVLADGFVFHMAPMSFTIPPNSAGGNFGLFNSSTLYGIPQNQIFMVEFDTFQNDEYDPLDLEQHVGINKNSLISVNYTKFDIEENNGKQGHALITYNSSTKSLVVSWSFNETITHTLSCETDLSEILPEYVIAGFSAGTGGSTSQHNIHSWEFNSTLDSTGSGVNRKKRQKRVIEIVALTCSVIVLVIMVCVSCSFTIIKKRIPKLQHDDGNHRHTVLVTSDLEKASIPRKFKYKELVLATNDFSDDTRLGSGGSSQVYKGFLSHLGCVVAVKKISIDIQGGEKMFINEVKIISRLMHRNLVRFIGWCCHNKREFFLVFEYMPNGSLDSHLFGNRRALPWDARYKIALELVDPRLKTQMTGVAGTYGYLAPEYLNGGRASKESDIYSFGIVALEIACGRKSYQDGEYHIPLVNWIWQLYLEGNILNGADESLNKNFDEAQMTCLLVVGLWCTNPKERERPKAAQVIKVLQLESPLPALPQDMHDHPFQPTMVTSRDSFQSSPITNSLVNDGR 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90623g00042 574 MobiDBLite consensus disorder prediction 554 574 - -
Stsc90623g00042 574 Pfam Protein kinase domain 419 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90623g00042 574 Pfam Protein kinase domain 307 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc90623g00042 574 SUPERFAMILY Concanavalin A-like lectins/glucanases 2 220 IPR013320 -
Stsc90623g00042 574 Gene3D Transferase(Phosphotransferase) domain 1 283 413 - -
Stsc90623g00042 574 Gene3D - 1 231 - -
Stsc90623g00042 574 SUPERFAMILY Protein kinase-like (PK-like) 290 552 IPR011009 -
Stsc90623g00042 574 PANTHER - 21 412 - -
Stsc90623g00042 574 FunFam Lectin-domain containing receptor kinase A4.3 410 551 - -
Stsc90623g00042 574 ProSitePatterns Protein kinases ATP-binding region signature. 312 336 IPR017441 GO:0005524
Stsc90623g00042 574 Pfam Legume lectin domain 2 220 IPR001220 GO:0030246
Stsc90623g00042 574 CDD lectin_legume_LecRK_Arcelin_ConA 3 219 IPR001220 GO:0030246
Stsc90623g00042 574 Gene3D Transferase(Phosphotransferase) domain 1 414 549 - -
Stsc90623g00042 574 ProSiteProfiles Protein kinase domain profile. 306 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90623g00042 Stsc-Chr90623 314522 323811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90623g00042 1 544 Receptor kinase-like Gene Family AT5G10530 40.833 7.91e-145 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Stsc90623g00042 Lectin_legB 9.2e-57 CL0004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90623g00042 - - gmx:100784490 617.076