LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90623g00040	ATGGCAACAATTGGTTTACTCTTGAATTTTCTCGTTGTTCCTTTCTTTCTATCAACCTTTGTTTTTGGCTATTCTCCAAATGAAGTCAAACAATGGTGCAGCCAAACACCAAATCCTCAACCATGTGAATATTTCTTGAGCAATAATAGCAACCCTACCTACCAAGCCCAATCTATTAACCAAAAAAGTGACTTTCTCAAGATTTCATTGCAACTTGCTCGAGATAGAGCACTCATAGAGCATGCAAACATTCTTTCACTTGGCTCAGAGTGTCGCAATCAACTTGAGAGAGTTGCATGGAATGATTGTGTTGAGCTCTATGAGCTAACCATTCACAAGCTCAATAAAATCTTAGACCCAAAAACCAAGTACACCCAATTTGATGTTCAAACATGGCTTAGCGCCGCTCTCACCAACCTTGAGACATGCAAAGATGGATTCAACGAACTCGGTGTTCAAGACAATCTTCTTCCTCTAATAATGTCCAACAATGTTACTGAGTTGTTGAGCAACACTTTAGCTCTTAATAGCAATAATGGTGGTGAATCTCATCTTCATCAAGAGTCAAGTTATCATCATTACAAAGATGGATTCCCAACATGGGTCAAGCAAAGTGATAGAAAGTTGTTGCAAGCATCTTCTCCAGTTTCAGAGGCTAATGTAGTTGTGGCCAAAGATGGTTCCGGAAAATACACAACAGTTACAGCAGCCATTAATGATGTACCAAAGAATGGCAGTGAAAGTTTCGAAGGTTATCAAGATACATTGTATGTTCATGCTCACAAACAATTTTACAGAGAATGTGATATATATGGAACAGTTGACTTTATCTTTGGTGATGCTTCTGCTGTATTCCAAAACTGCAACATCTATGCAAGAAACCCTCCAAACAAAACCAACACCATCACTGCACAAGGAAGAACTAATCTAAACCAAACTTCCGGAATTATCATTGACAATTGTGTGGTTACATCTGCACCGGATTTGAAAGCAGCTGTTCCAGGCTCTGTGAAGACATATCTTGGAAGGCCTTGGAAGGAATATTCAAGAACTGTGTTCATAAACAGTTTTCTTGATAGTTTGATTGATCCAGCATGCTGGTCGGAATGGAATAATAGCGACTTTGCATTAAACACATTGTATTATGGAGAGTACATGAACAAAGGACCTGGATCTTCCACTGCAAATAGAGTTAACTGGAGTGGTTATCATGTCATTACCAATGAGACTGAAGCTTTACAATTCAGTGTTGGAAATTTCATTGATGGCAACTCCTGGCTACCATCCACTCATGTGCCTTTCAACATTACTATTTAG	1317	0.3895	MATIGLLLNFLVVPFFLSTFVFGYSPNEVKQWCSQTPNPQPCEYFLSNNSNPTYQAQSINQKSDFLKISLQLARDRALIEHANILSLGSECRNQLERVAWNDCVELYELTIHKLNKILDPKTKYTQFDVQTWLSAALTNLETCKDGFNELGVQDNLLPLIMSNNVTELLSNTLALNSNNGGESHLHQESSYHHYKDGFPTWVKQSDRKLLQASSPVSEANVVVAKDGSGKYTTVTAAINDVPKNGSESFEGYQDTLYVHAHKQFYRECDIYGTVDFIFGDASAVFQNCNIYARNPPNKTNTITAQGRTNLNQTSGIIIDNCVVTSAPDLKAAVPGSVKTYLGRPWKEYSRTVFINSFLDSLIDPACWSEWNNSDFALNTLYYGEYMNKGPGSSTANRVNWSGYHVITNETEALQFSVGNFIDGNSWLPSTHVPFNITI	438

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90623g00040	438	SUPERFAMILY	Plant invertase/pectin methylesterase inhibitor	27	177	IPR035513	-
	Stsc90623g00040	438	SUPERFAMILY	Pectin lyase-like	214	437	IPR011050	-
	Stsc90623g00040	438	Pfam	Pectinesterase	248	424	IPR000070	GO:0030599\|GO:0042545
	Stsc90623g00040	438	NCBIfam	pectinesterase inhibitor domain	8	177	IPR006501	GO:0004857
	Stsc90623g00040	438	ProSitePatterns	Pectinesterase signature 2.	270	279	IPR033131	-
	Stsc90623g00040	438	Pfam	Plant invertase/pectin methylesterase inhibitor	28	175	IPR006501	GO:0004857
	Stsc90623g00040	438	Gene3D	-	181	247	IPR012334	-
	Stsc90623g00040	438	SMART	PMEI_2	24	175	IPR006501	GO:0004857
	Stsc90623g00040	438	Gene3D	Invertase/pectin methylesterase inhibitor family protein	24	178	IPR035513	-
	Stsc90623g00040	438	Gene3D	-	248	438	IPR012334	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90623g00040	Stsc-Chr90623	298978	300851	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90623g00040	1	434	Carbohydrate Esterase	AT2G45220	44.681	6.07e-146	424

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90623g00040	K01051		-	jre:109015670	451.055

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