Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90623g00040 ATGGCAACAATTGGTTTACTCTTGAATTTTCTCGTTGTTCCTTTCTTTCTATCAACCTTTGTTTTTGGCTATTCTCCAAATGAAGTCAAACAATGGTGCAGCCAAACACCAAATCCTCAACCATGTGAATATTTCTTGAGCAATAATAGCAACCCTACCTACCAAGCCCAATCTATTAACCAAAAAAGTGACTTTCTCAAGATTTCATTGCAACTTGCTCGAGATAGAGCACTCATAGAGCATGCAAACATTCTTTCACTTGGCTCAGAGTGTCGCAATCAACTTGAGAGAGTTGCATGGAATGATTGTGTTGAGCTCTATGAGCTAACCATTCACAAGCTCAATAAAATCTTAGACCCAAAAACCAAGTACACCCAATTTGATGTTCAAACATGGCTTAGCGCCGCTCTCACCAACCTTGAGACATGCAAAGATGGATTCAACGAACTCGGTGTTCAAGACAATCTTCTTCCTCTAATAATGTCCAACAATGTTACTGAGTTGTTGAGCAACACTTTAGCTCTTAATAGCAATAATGGTGGTGAATCTCATCTTCATCAAGAGTCAAGTTATCATCATTACAAAGATGGATTCCCAACATGGGTCAAGCAAAGTGATAGAAAGTTGTTGCAAGCATCTTCTCCAGTTTCAGAGGCTAATGTAGTTGTGGCCAAAGATGGTTCCGGAAAATACACAACAGTTACAGCAGCCATTAATGATGTACCAAAGAATGGCAGTGAAAGTTTCGAAGGTTATCAAGATACATTGTATGTTCATGCTCACAAACAATTTTACAGAGAATGTGATATATATGGAACAGTTGACTTTATCTTTGGTGATGCTTCTGCTGTATTCCAAAACTGCAACATCTATGCAAGAAACCCTCCAAACAAAACCAACACCATCACTGCACAAGGAAGAACTAATCTAAACCAAACTTCCGGAATTATCATTGACAATTGTGTGGTTACATCTGCACCGGATTTGAAAGCAGCTGTTCCAGGCTCTGTGAAGACATATCTTGGAAGGCCTTGGAAGGAATATTCAAGAACTGTGTTCATAAACAGTTTTCTTGATAGTTTGATTGATCCAGCATGCTGGTCGGAATGGAATAATAGCGACTTTGCATTAAACACATTGTATTATGGAGAGTACATGAACAAAGGACCTGGATCTTCCACTGCAAATAGAGTTAACTGGAGTGGTTATCATGTCATTACCAATGAGACTGAAGCTTTACAATTCAGTGTTGGAAATTTCATTGATGGCAACTCCTGGCTACCATCCACTCATGTGCCTTTCAACATTACTATTTAG 1317 0.3895 MATIGLLLNFLVVPFFLSTFVFGYSPNEVKQWCSQTPNPQPCEYFLSNNSNPTYQAQSINQKSDFLKISLQLARDRALIEHANILSLGSECRNQLERVAWNDCVELYELTIHKLNKILDPKTKYTQFDVQTWLSAALTNLETCKDGFNELGVQDNLLPLIMSNNVTELLSNTLALNSNNGGESHLHQESSYHHYKDGFPTWVKQSDRKLLQASSPVSEANVVVAKDGSGKYTTVTAAINDVPKNGSESFEGYQDTLYVHAHKQFYRECDIYGTVDFIFGDASAVFQNCNIYARNPPNKTNTITAQGRTNLNQTSGIIIDNCVVTSAPDLKAAVPGSVKTYLGRPWKEYSRTVFINSFLDSLIDPACWSEWNNSDFALNTLYYGEYMNKGPGSSTANRVNWSGYHVITNETEALQFSVGNFIDGNSWLPSTHVPFNITI 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90623g00040 438 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 177 IPR035513 -
Stsc90623g00040 438 SUPERFAMILY Pectin lyase-like 214 437 IPR011050 -
Stsc90623g00040 438 Pfam Pectinesterase 248 424 IPR000070 GO:0030599|GO:0042545
Stsc90623g00040 438 NCBIfam pectinesterase inhibitor domain 8 177 IPR006501 GO:0004857
Stsc90623g00040 438 ProSitePatterns Pectinesterase signature 2. 270 279 IPR033131 -
Stsc90623g00040 438 Pfam Plant invertase/pectin methylesterase inhibitor 28 175 IPR006501 GO:0004857
Stsc90623g00040 438 Gene3D - 181 247 IPR012334 -
Stsc90623g00040 438 SMART PMEI_2 24 175 IPR006501 GO:0004857
Stsc90623g00040 438 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 178 IPR035513 -
Stsc90623g00040 438 Gene3D - 248 438 IPR012334 -
Stsc90623g00040 438 CDD PMEI-like_3 32 178 - -
Stsc90623g00040 438 PANTHER PECTINESTERASE 248 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90623g00040 Stsc-Chr90623 298978 300851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90623g00040 1 434 Carbohydrate Esterase AT2G45220 44.681 6.07e-146 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90623g00040 K01051 - jre:109015670 451.055