Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00074 ATGGGTAGAGCTCCATGCTGTGAGAAAATGGGGTTGAAGAAGGGGCCATGGACCCCTGAAGAAGATCAAATCCTCATCAATTATATCAAAACAAATGGTCACAACAATTGGCGTGCTCTTCCCAAACAAGCTGGGTTATTGAGATGTGGAAAGAGTTGCAGACTGAGATGGATAAATTATCTGAGGCCAGATATCAAAAGGGGCAACTTTACAAGTGAGGAAGAAGAGACAATAATCAAGTTACATGAAATGTTGGGGAACAGATGGTCAGCAATTGCAGCAAGATTACCGGGTCGCACTGATAACGAGATTAAAAATGTGTGGCACACCCACTTGAAGAAGAGGTTGCCCCCACAGGAACATAGCAACAATAATAAGAACACAAAGAAGAGGAAGAACAACTCGGAAATTACCAAAAAGTCCAACAAAAAATCTTCAAAACAAAAGCAAGAAAAAGAAGAAGAAGAAGGAGTGGAACAACACATCAAAATTGAGGGAACCCCAATGTCCCCTACCACACAGTGTTCAAGCAGTGGTAGCACTAATATTACTAATAATAATAATAATAATGGTGGGGAATCGATTAATAACGAAGATGATGGTAATAATAATAATAAGGATGATGATGATAATTTGGCATTGGACGAGGATTTTTGGTCTGAAGTTTTGTCATCGGATAATTCCAATGATGAGGAAGCAAGAAAATTTGAGGACATTGAATTTAGTGATGACTTGTTCCAATTTCCATTGTTCTCTTCATCATCTTCAAGTGTTGCATGTGATGACTTAGATTTTTGGTATGATTTTTGCTCTAAATCTTTGGAATTGCCACAATTGTGA 840 0.3821 MGRAPCCEKMGLKKGPWTPEEDQILINYIKTNGHNNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEETIIKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPPQEHSNNNKNTKKRKNNSEITKKSNKKSSKQKQEKEEEEGVEQHIKIEGTPMSPTTQCSSSGSTNITNNNNNNGGESINNEDDGNNNNKDDDDNLALDEDFWSEVLSSDNSNDEEARKFEDIEFSDDLFQFPLFSSSSSSVACDDLDFWYDFCSKSLELPQL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00074 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc90622g00074 279 CDD SANT 69 112 IPR001005 -
Stsc90622g00074 279 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 233 - -
Stsc90622g00074 279 CDD SANT 16 61 IPR001005 -
Stsc90622g00074 279 Gene3D - 69 116 - -
Stsc90622g00074 279 SMART sant 66 114 IPR001005 -
Stsc90622g00074 279 SMART sant 13 63 IPR001005 -
Stsc90622g00074 279 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc90622g00074 279 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Stsc90622g00074 279 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc90622g00074 279 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc90622g00074 279 Gene3D - 11 67 - -
Stsc90622g00074 279 MobiDBLite consensus disorder prediction 110 212 - -
Stsc90622g00074 279 FunFam Myb transcription factor 11 67 - -
Stsc90622g00074 279 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc90622g00074 279 MobiDBLite consensus disorder prediction 166 199 - -
Stsc90622g00074 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc90622g00074 279 MobiDBLite consensus disorder prediction 110 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00074 Stsc-Chr90622 558905 563339 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00074 1 279 MYB Transcription Factor Family AT2G31180 50.704 6.53e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc90622g00074 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00074 K09422 - gmx:100775603 267.7