Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00065 ATGGATTTTGATCCTTCTTCTTTCTTCCAACAACAAAACACTACTACTACTTCTCACTATTACTCTTCAAATCCCTCTTTTTTTTCTTCTTCTTCTTATTCTTCTTCTTTAGATCCTTATAACTTCTCTTTAGAAGACTTGTTGTGTTTCATGAATTATGATGAAGAAGATAACAAAAATAATGTTAACAACAATAACAACAACAACAACCTTGTTTTTCCCTTCAACAAAATCAAGGAATCTTCATCTTCCTATGATGATTCTTCCAACATTGAAGGATCACAAGGAAGCAACAATGAATCATCATCATCATCACAAGAAGTCTCATCTATTCAAGGTCAATTACCTGTATCGCCGCCGCCGTCGTCGCCGCCGCAGCCGCAAATAACAACGGCAACAATGGTGGCAACAGCAAAATTACCATTATACCCTCCAAGGGAAAACAAGGAGAAAAGGCCCTATAGGGGAGTAAGGAGAAGGCCATGGGGTAAATTTGCAGCTGAGATAAGAGACTCAACAAGGAATGGTGTTAGGGTTTGGATTGGAACATTTGACACAGCTGAAGCTGCAGCTTTGGCTTATGACCAAGCTGCTTTGACCACAAGAGGATCCATGGCAGTTCTCAATTTCCCTGAAGAAGTTGTTAGGGAATCACTCAAGGACATTATGGTAAATACCAACAGCAACAGCAATGGCTTTAACTTTAAGGCTTGTTTGGGAGAAGATGGTTCTTCTCCTGTTTTAGCACTCAAGAGGAAACACACCATGAGGAAAAAGTCAAAGTCAAAGTCAAAGTCAAAGGTTAGTAGTAGTAGCAACAACAACAGCCATAACAACACCAATAACAGCAATAAGAAGGCAAAGAGGGATGATGATGTTTTGGTGTTGGAGGATTTGGGTTCTGAATATCTTGAACAGCTTCTGATTTTGACTTCTTCTTCTTCTGATGAAGGCATTATTTGCTAG 966 0.3934 MDFDPSSFFQQQNTTTTSHYYSSNPSFFSSSSYSSSLDPYNFSLEDLLCFMNYDEEDNKNNVNNNNNNNNLVFPFNKIKESSSSYDDSSNIEGSQGSNNESSSSSQEVSSIQGQLPVSPPPSSPPQPQITTATMVATAKLPLYPPRENKEKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALTTRGSMAVLNFPEEVVRESLKDIMVNTNSNSNGFNFKACLGEDGSSPVLALKRKHTMRKKSKSKSKSKVSSSSNNNSHNNTNNSNKKAKRDDDVLVLEDLGSEYLEQLLILTSSSSDEGIIC 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00065 321 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Stsc90622g00065 321 MobiDBLite consensus disorder prediction 266 282 - -
Stsc90622g00065 321 MobiDBLite consensus disorder prediction 137 156 - -
Stsc90622g00065 321 Pfam AP2 domain 154 203 IPR001471 GO:0003700|GO:0006355
Stsc90622g00065 321 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Stsc90622g00065 321 MobiDBLite consensus disorder prediction 252 290 - -
Stsc90622g00065 321 PRINTS Ethylene responsive element binding protein signature 177 193 IPR001471 GO:0003700|GO:0006355
Stsc90622g00065 321 PRINTS Ethylene responsive element binding protein signature 154 165 IPR001471 GO:0003700|GO:0006355
Stsc90622g00065 321 Gene3D AP2/ERF domain 153 213 IPR036955 GO:0003700|GO:0006355
Stsc90622g00065 321 PANTHER DNA-BINDING DOMAIN 94 309 IPR044808 GO:0003700|GO:0009873
Stsc90622g00065 321 FunFam Ethylene-responsive transcription factor 2 152 212 - -
Stsc90622g00065 321 MobiDBLite consensus disorder prediction 83 129 - -
Stsc90622g00065 321 CDD AP2 154 212 IPR001471 GO:0003700|GO:0006355
Stsc90622g00065 321 SUPERFAMILY DNA-binding domain 154 212 IPR016177 GO:0003677
Stsc90622g00065 321 MobiDBLite consensus disorder prediction 83 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00065 Stsc-Chr90622 470673 471658 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00065 150 309 AP2-EREBP Transcription Factor Family AT2G31230 54.651 1.28e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00065 AP2 1.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00065 K14516 - gmx:100780775 203.756