LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90622g00062	ATGGCAGGTCTTGCTCCAAAACCCAAGGTTTTAAGAGATCGAAAATGGAAAGAGGAGGAAGCTACTGTATTAGTGCCAGGAGACATCGTAAGCATAAAATTAGGAGACATAATTCCAGCAGATGCTCGTCTCTTAGAAAGGGATCCACTCAAGATTGACCAATCGGCACTCACTGGTGAATCATTGCCTGTAACTAAGAATCTGGATTCTGAAGTCTACTCCGGTTCCACAGTGAAACAAGGAGAGATTGAAGCTATTGTCATTGCCACTGGAGTCCACACTTTCTTTGGCAAGGCTGCTCATTTGGTAGACAACATTAACCAAGTTGGCCACTTCCAAAAGGTACTATTATCTCATTAA	360	0.4278	MAGLAPKPKVLRDRKWKEEEATVLVPGDIVSIKLGDIIPADARLLERDPLKIDQSALTGESLPVTKNLDSEVYSGSTVKQGEIEAIVIATGVHTFFGKAAHLVDNINQVGHFQKVLLSH	119

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90622g00062	119	Pfam	E1-E2 ATPase	5	115	-	-
	Stsc90622g00062	119	PANTHER	CALCIUM-TRANSPORTING ATPASE	1	116	-	-
	Stsc90622g00062	119	SUPERFAMILY	Calcium ATPase, transduction domain A	7	103	IPR008250	-
	Stsc90622g00062	119	Gene3D	-	6	90	-	-
	Stsc90622g00062	119	Gene3D	-	3	107	-	-
	Stsc90622g00062	119	FunFam	Plasma membrane ATPase	6	90	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90622g00062	Stsc-Chr90622	448499	448954	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90622g00062	6	118	Primary Pumps ATPases	AT2G18960	84.071	1.87e-59	194

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90622g00062	K01535		-	atri:130814876	201.445

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