Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00060 ATGGAGGGAGGGAGATCATCATCATCATCATCAATTTCTAATGGCAATGGTGAAGTAAGGTATAGAGGGATTCGTAGGAGGCCATGGGGAAAATTTGCGGCGGAAATTCGTGACCCTACGAGAAAAGGGACACGGATATGGCTCGGAACATTTGAGACGGCGGAAGAAGCTGCAAGGGCTTATGATGCTGCTGCTTTTCATTTCCGTGGCCATAGGGCTATTCTCAACTTCCCAAATGAGCATCAAGCTCCTATTAACCCTAATTTGCCGTTGCCTCTTCCTCTTCCTCTTCATTCTTCTCCTACTCCTCATTCAAATGCGAATTCATATAATAATCCACATTCGTGTTCGAATGAGGGAATAATACAGGGCGATTATAATCATGATGGTGCTTTGGAGCTGGAATATTTTGACAATAAGTTGTTGGAAGAACTTCTCCAAGAAGCTCAAGATGATGATAGGCAAATGATCAGAGATGATTGTGGTGGTGGTTCGTCGGAGGGTTCAAACTTCAAACAAAAAGGCATTTTGGAGAGAGGTGAGATGGGACTTGAGGATGATGAATAA 567 0.4356 MEGGRSSSSSSISNGNGEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFETAEEAARAYDAAAFHFRGHRAILNFPNEHQAPINPNLPLPLPLPLHSSPTPHSNANSYNNPHSCSNEGIIQGDYNHDGALELEYFDNKLLEELLQEAQDDDRQMIRDDCGGGSSEGSNFKQKGILERGEMGLEDDE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00060 188 PANTHER DNA-BINDING DOMAIN 15 144 IPR044808 GO:0003700|GO:0009873
Stsc90622g00060 188 Pfam AP2 domain 20 71 IPR001471 GO:0003700|GO:0006355
Stsc90622g00060 188 Coils Coil 139 159 - -
Stsc90622g00060 188 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
Stsc90622g00060 188 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Stsc90622g00060 188 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Stsc90622g00060 188 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Stsc90622g00060 188 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Stsc90622g00060 188 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Stsc90622g00060 188 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc90622g00060 188 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Stsc90622g00060 188 MobiDBLite consensus disorder prediction 151 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00060 Stsc-Chr90622 436406 437927 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00060 16 146 AP2-EREBP Transcription Factor Family AT3G23230 51.908 1.49e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00060 AP2 2.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00060 - - aip:107628225 206.838