Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00056 ATGTGCACAACCACTCCTCCTAATTTCTTTCAGATCCCAGATTGGGACATGTCCCAATTTCATGATAATAATGTTTCAGACACTACATTATTCTGCTACCAATCATTCAAGAACAACAACAACAATGGATTATTCACAAGCCACCCTTCTTTCTATATAAATAATAATAGTTCATTACTTTCCTTTGATGATATGGTGATTGACTTCTCCATTGATTATTCACGATCACAATCACAAGTACCAACAACAACCATAGAGAGTAACAACAAGAAGAAGGAAGAGGAGGAAATTATGAAGAGGCTTCAAGATGATGATGATAAGAAGGGAAGAAGAAGAACAAGTTACATAGGAGTGAGGAAGAGGCCATGGGGAAAATATGCAGCTGAAATCAGAGACACAACAAGAAAAGGAACAAGGGTTTGGCTTGGAACATTTGAAAGTGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCTTTCTCCATGCGAGGTTACAATGCTGTTCTTAACTTCCCATTCCAAAGGGTCAAAGATTCCTTGCAAGGAATTCAATATGATTGTTGTTGTTCTTCTTCATCTTCGTCTTCAACATCACCAGCACTTGTTCTCAAAGAGAGGAACTGCATCAAAAGAAAATTATTGTCATCAAAGACTAACAAGAACAAGAAAAGGGAATCTGAATCATCAGCAGCAGCAGCATCAGAGGAATCTTCATCATCAACAACTAATAATAGTGGTGTGGTGGTTTTTGAGGATTTGGGAGCTGAATATCTAGAACAACTCCTAAGCATTTCAGATCAAACTAGTTAA 810 0.3778 MCTTTPPNFFQIPDWDMSQFHDNNVSDTTLFCYQSFKNNNNNGLFTSHPSFYINNNSSLLSFDDMVIDFSIDYSRSQSQVPTTTIESNNKKKEEEEIMKRLQDDDDKKGRRRTSYIGVRKRPWGKYAAEIRDTTRKGTRVWLGTFESAEDAALAYDQAAFSMRGYNAVLNFPFQRVKDSLQGIQYDCCCSSSSSSSTSPALVLKERNCIKRKLLSSKTNKNKKRESESSAAAASEESSSSTTNNSGVVVFEDLGAEYLEQLLSISDQTS 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00056 269 Gene3D AP2/ERF domain 114 174 IPR036955 GO:0003700|GO:0006355
Stsc90622g00056 269 CDD AP2 115 172 IPR001471 GO:0003700|GO:0006355
Stsc90622g00056 269 MobiDBLite consensus disorder prediction 87 112 - -
Stsc90622g00056 269 SUPERFAMILY DNA-binding domain 114 173 IPR016177 GO:0003677
Stsc90622g00056 269 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Stsc90622g00056 269 SMART rav1_2 114 178 IPR001471 GO:0003700|GO:0006355
Stsc90622g00056 269 Pfam AP2 domain 114 164 IPR001471 GO:0003700|GO:0006355
Stsc90622g00056 269 PANTHER DNA-BINDING DOMAIN 81 263 IPR044808 GO:0003700|GO:0009873
Stsc90622g00056 269 FunFam Ethylene-responsive transcription factor 2 113 174 - -
Stsc90622g00056 269 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Stsc90622g00056 269 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Stsc90622g00056 269 MobiDBLite consensus disorder prediction 78 113 - -
Stsc90622g00056 269 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00056 Stsc-Chr90622 399650 400559 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00056 114 266 AP2-EREBP Transcription Factor Family AT3G23240 49.359 1.21e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00056 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00056 K14516 - gmx:100812017 178.333