Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00052 ATGAGCACTACTTCTCCTTCTCCTTCTGCTTTGTTTGAGATCCCAGATTGGGACATGTCACACACTGCTTTCTGCTACCAATCATTCATCACAACCACGATCAACAACAACAACAATCAATCACAATCACAATCACAAGCACCAGCCACAGAGAACAAGAACAAGAAGAAGAAGAAGGAAGAGAATAGTGTGAAGAAGAAGCTTGAAGAACATGTTGATGATGGTAATAATAATAATAATAAGGGAAGAAGAACAAGTTACATAGGAGTGAGGAAAAGGCCATGGGGAAAATTCGCGGCTGAAATTCGAGACACAACAAGGAATGGTACTAGGGTTTGGCTTGGAACTTTCGAGAACGCTGAAGATGCTGCTTTGGCTTATGATCAAGCTGCTTTCTCCATGAGAGGCTACAATGCTGTTCTTAACTTTCCATTCCAAAGGGTCAAAGATTCTTTGCAAGGAATTCAATATGGTTGTTCTTCTTCTTCTTCTTCAACGTCACCAGCACTTGTTCTCAAAGAGAGGAACTACATCAAAAGAAAATTATTGTCATCAAAGAATAACAAGAACAAGAAAAGGGAATCTGAATCATCATCATCAGTATCAGAGGAATCTTCATCATCAACAACTAATAATAATAGTGGTGTAATGGTGTTTGAGGATTTGGGAGCTGAATATCTGGAACAACTTCTAAGCATTTCAGATCAAACTAGTTAA 717 0.3863 MSTTSPSPSALFEIPDWDMSHTAFCYQSFITTTINNNNNQSQSQSQAPATENKNKKKKKEENSVKKKLEEHVDDGNNNNNKGRRTSYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFENAEDAALAYDQAAFSMRGYNAVLNFPFQRVKDSLQGIQYGCSSSSSSTSPALVLKERNYIKRKLLSSKNNKNKKRESESSSSVSEESSSSTTNNNSGVMVFEDLGAEYLEQLLSISDQTS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00052 238 FunFam Ethylene-responsive transcription factor 2 85 146 - -
Stsc90622g00052 238 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
Stsc90622g00052 238 MobiDBLite consensus disorder prediction 37 85 - -
Stsc90622g00052 238 MobiDBLite consensus disorder prediction 200 215 - -
Stsc90622g00052 238 Pfam AP2 domain 86 136 IPR001471 GO:0003700|GO:0006355
Stsc90622g00052 238 SUPERFAMILY DNA-binding domain 86 145 IPR016177 GO:0003677
Stsc90622g00052 238 MobiDBLite consensus disorder prediction 183 215 - -
Stsc90622g00052 238 MobiDBLite consensus disorder prediction 51 78 - -
Stsc90622g00052 238 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Stsc90622g00052 238 CDD AP2 87 144 IPR001471 GO:0003700|GO:0006355
Stsc90622g00052 238 PANTHER DNA-BINDING DOMAIN 42 232 IPR044808 GO:0003700|GO:0009873
Stsc90622g00052 238 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Stsc90622g00052 238 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Stsc90622g00052 238 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00052 Stsc-Chr90622 366137 366940 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00052 86 235 AP2-EREBP Transcription Factor Family AT3G23240 51.948 8.84e-45 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00052 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00052 K14516 - gmx:100527364 174.096