Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00039 ATGATGACCAATAATAATAATAATCCTTTGTTGTTTCATCAAAACCCAGATTTTTGGGATGCTGATTCAGACATCACTTCCTCTTTTTGGTTGCAATCATTAGAAACCAAGAATGATTATGGTTGTGTTGTTTTTGATGACCCATTTCAAGATTCTTCTTCTTCTTTATCTTTTGAGATGGTTGACTTTTCATCATCATCATCATCAGAATCATCAACAAGCTTAAAGAAGAAGATCAAGAAGCATGAAGAAGAACATGATGATGATAATAAGAAGGGAAGAAGAAGAAGTTATATAGGAGTGAGGAAAAGGCCATGGGGAAAATTCGCAGCCGAAATTCGAGACACAACAAGAAAAGGAACAAGGGTTTGGCTTGGAACATTCGAGAGTGCTGAAGATGCTGCTTTGGCTTATGACCAAGCTGCATTCTCCATGAGAGGCTACTCTGCTGTTCTTAACTTTCCATTCCAAAGGGTCAAAGATTCCTTGCAAGGAATCATCACCATGGAAGAATCTTCTGATTACAACAAACTATCCAAACCCTTTTCTTCTTCTTCTTCTTCTTCTTCTTGTTCACCTGCGCTTGCACTCAAAGAGAGGAACTCCATCAAAAGAAAATTAGCATCCTCCTCATCATCAAAGGCCAACAAGAACAAGAACAAAAGAAAGGAATCATCACAGGAATCTTCATCAACTACTACCAATAATAATAAGAGTGGTGATGTGATGGTTTTGGAGGATTTAGGAGTTGAATATCTTGAGCATCTACTAAGCATTTCAGAGCCTCATCATCAAATCACACCATCATGCCCTAATTACTTCTTCTGCAACAAAAATGAAGCCTTGTTACCCTCCTCACCACCACCAGGTGAAGTCGACTACATTGATTAA 891 0.3827 MMTNNNNNPLLFHQNPDFWDADSDITSSFWLQSLETKNDYGCVVFDDPFQDSSSSLSFEMVDFSSSSSSESSTSLKKKIKKHEEEHDDDNKKGRRRSYIGVRKRPWGKFAAEIRDTTRKGTRVWLGTFESAEDAALAYDQAAFSMRGYSAVLNFPFQRVKDSLQGIITMEESSDYNKLSKPFSSSSSSSSCSPALALKERNSIKRKLASSSSSKANKNKNKRKESSQESSSTTTNNNKSGDVMVLEDLGVEYLEHLLSISEPHHQITPSCPNYFFCNKNEALLPSSPPPGEVDYID 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00039 296 FunFam Ethylene-responsive transcription factor 2 96 157 - -
Stsc90622g00039 296 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Stsc90622g00039 296 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Stsc90622g00039 296 MobiDBLite consensus disorder prediction 64 97 - -
Stsc90622g00039 296 Coils Coil 72 92 - -
Stsc90622g00039 296 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Stsc90622g00039 296 MobiDBLite consensus disorder prediction 74 95 - -
Stsc90622g00039 296 PANTHER DNA-BINDING DOMAIN 70 258 IPR044808 GO:0003700|GO:0009873
Stsc90622g00039 296 Gene3D AP2/ERF domain 96 157 IPR036955 GO:0003700|GO:0006355
Stsc90622g00039 296 MobiDBLite consensus disorder prediction 202 241 - -
Stsc90622g00039 296 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Stsc90622g00039 296 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Stsc90622g00039 296 CDD AP2 98 155 IPR001471 GO:0003700|GO:0006355
Stsc90622g00039 296 Pfam AP2 domain 98 147 IPR001471 GO:0003700|GO:0006355
Stsc90622g00039 296 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00039 Stsc-Chr90622 285637 286737 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00039 96 261 AP2-EREBP Transcription Factor Family AT3G23240 49.398 2.55e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00039 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00039 K14516 - gmx:100782036 147.902