Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00038 ATGGAAGACGAGGACTCAAAAAAGGCTAAGGTTGAGATTGAATCACCAAAACAAACTAGATATAGAGGGGTCCGGCGGCGGCCTTGGGGCAAGTTTGCAGCCGAGATCAGGGATTCGAACCGGCATGGCGCCCGAGTGTGGCTTGGGACATACTTGACGGCTGAGGAGGCTGCAAGGGCTTATGACAAGGCTGCCTTTGAAATGAGAGGTGCTTCGGCCATACTCAATTTCCCAAATGAGTATAATAATAATAATAATTTATGCAATGATCTTGGTTCCACTATAAACCACTCCTCATCATCTAACTTCTCAATGGCATCAATAATGTCAAGTTCATCTTCATTGGTTATTACAAATAGTGAGAATGATAAACAAGTTATTGAGTTAGAGTGTATGGATGATAAGTTGCTAGAGGAGCTTCTTGCTTGCGATGAGAGTGAGAAGAATAAAGAATTCCCTAGTAATATGTAG 471 0.4246 MEDEDSKKAKVEIESPKQTRYRGVRRRPWGKFAAEIRDSNRHGARVWLGTYLTAEEAARAYDKAAFEMRGASAILNFPNEYNNNNNLCNDLGSTINHSSSSNFSMASIMSSSSSLVITNSENDKQVIELECMDDKLLEELLACDESEKNKEFPSNM 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00038 156 Pfam AP2 domain 19 70 IPR001471 GO:0003700|GO:0006355
Stsc90622g00038 156 MobiDBLite consensus disorder prediction 1 20 - -
Stsc90622g00038 156 SUPERFAMILY DNA-binding domain 20 79 IPR016177 GO:0003677
Stsc90622g00038 156 CDD AP2 19 75 IPR001471 GO:0003700|GO:0006355
Stsc90622g00038 156 PANTHER DNA-BINDING DOMAIN 9 145 IPR044808 GO:0003700|GO:0009873
Stsc90622g00038 156 ProSiteProfiles AP2/ERF domain profile. 20 78 IPR001471 GO:0003700|GO:0006355
Stsc90622g00038 156 FunFam Ethylene-responsive transcription factor 2 19 79 - -
Stsc90622g00038 156 Gene3D AP2/ERF domain 19 79 IPR036955 GO:0003700|GO:0006355
Stsc90622g00038 156 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Stsc90622g00038 156 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Stsc90622g00038 156 SMART rav1_2 20 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00038 Stsc-Chr90622 264495 264965 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00038 17 148 AP2-EREBP Transcription Factor Family AT3G23230 54.545 2.14e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00038 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00038 - - gmx:100810414 141.739