Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00030 ATGCTTGACTTTTCATCATGTTCAAAATCAACAACAACAAGAAGCAGCTTAAAGAAGGAGAAGAAGAAGCAGCATGAACAAGAAGAAGAAGATGACGATGATAAGAAGGCGGCGGGAAGAGGAAGAAGTTACATAGGAGTGAGGAAAAGGCCATGGGGAAAATATGCAGCTGAAATCAGAGACACAACAAGAAAAGGAACAAGGGTTTGGCTTGGAACATTCGAGAGTGCTGAAGATGCCGCTTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGTTACTCTGCTGTTCTCAACTTTCCATTCCAAAGGGTCAAAGATTCCTTGCAAGGAATCATCACCATGGAAGAATCTTCTGATTACAACAAACTATCCAAACCCTTTTCTTCTTCTTCTTCTTGTTCACCTGCACTTGCACTCAAAGAGAGGAACTCCATCAAAAGAAAATTAGCATCCTCCTCATCATCAAAGGCCAACAAGAACAAGAACAAAAGAAAGGAATCATCACAGGAATCTTCATCAACTACTACCAATAATAATAAGAGTGGTGATGTGATGGTTTTGGAGGATTTGGGAGTTGAATATCTTGAGCATCTACTAAGCATTTCAGAGTCTCATCATGAAACCACACCATCATGCCCTAATTACTTCTTCTGCAACAAAAATGATGCCTTGCCCCTCTCCTCCTCACCGCCAGGTGTGATCAGCTATAATTATCCAACAGTAATATAA 732 0.4085 MLDFSSCSKSTTTRSSLKKEKKKQHEQEEEDDDDKKAAGRGRSYIGVRKRPWGKYAAEIRDTTRKGTRVWLGTFESAEDAALAYDQAAFSMRGYSAVLNFPFQRVKDSLQGIITMEESSDYNKLSKPFSSSSSCSPALALKERNSIKRKLASSSSSKANKNKNKRKESSQESSSTTTNNNKSGDVMVLEDLGVEYLEHLLSISESHHETTPSCPNYFFCNKNDALPLSSSPPGVISYNYPTVI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00030 243 PANTHER DNA-BINDING DOMAIN 20 204 IPR044808 GO:0003700|GO:0009873
Stsc90622g00030 243 SUPERFAMILY DNA-binding domain 44 102 IPR016177 GO:0003677
Stsc90622g00030 243 FunFam Ethylene-responsive transcription factor 2 42 103 - -
Stsc90622g00030 243 MobiDBLite consensus disorder prediction 14 41 - -
Stsc90622g00030 243 MobiDBLite consensus disorder prediction 170 184 - -
Stsc90622g00030 243 ProSiteProfiles AP2/ERF domain profile. 43 101 IPR001471 GO:0003700|GO:0006355
Stsc90622g00030 243 Gene3D AP2/ERF domain 43 103 IPR036955 GO:0003700|GO:0006355
Stsc90622g00030 243 MobiDBLite consensus disorder prediction 1 44 - -
Stsc90622g00030 243 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Stsc90622g00030 243 Pfam AP2 domain 44 93 IPR001471 GO:0003700|GO:0006355
Stsc90622g00030 243 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Stsc90622g00030 243 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Stsc90622g00030 243 MobiDBLite consensus disorder prediction 145 184 - -
Stsc90622g00030 243 SMART rav1_2 43 107 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00030 Stsc-Chr90622 222146 222915 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00030 42 204 AP2-EREBP Transcription Factor Family AT3G23240 50.307 1.40e-44 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc90622g00030 AP2 9.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00030 K14516 - gmx:100782036 145.206