Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00026 ATGGTGGTTGAGGAAGGTTTGGATGGAGATATTACTTCATGTGAGATGACAGGAACAGCAAGTCATACACAGATTCCGGATCAAGAAAATTCCCAAGAAATGAAGGGAAGGGAGCAGGCTCCAAAGAAGAACAAGTCCAAAGCTAAAAGCAATGGAACAGTACCCTTTTACAAGCTTTTCTCATTTGCAGATTCTTGGGATCATTTGCTGATGTTTGTTGGGACAATAAGTGCAGTTGGTAATGGAGTATCCGTCCCTTTAATGAGTGTACTAATTGGAGACACCATTGATGCTTTTGGACTAAATGGTAGCAACAAACAAGTTGCTCATGAAGTTTCCAAGGTGTCTCTGAAGTTTCTGTGCTTGGGTATAGCTGTCTTTTTAGCAGGATTTCTGCAGGTTGCTTGTTGGGTGATCACTGGGGAGAGGCAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCGATTCTGAGACAAGACGTTGGCTTCTTCGACAAGGAAACTAACACCGGAGAGGTTATCGGAAGGATGTCAGGTGACACAATTCTTGTTCAAGAAGCCATGGGGGAAAAGGTAGGACAGTTGATACAGTATGTGGCAAACTTTTCAGGAGGGCTTACCATAGGATTCATCAAGGGTTGGCTTCTAACCCTTGTCCTGCTATCTTCCCTCCCTCCTCTTGTCTTTGCTGGTTCTTTAATGACTTTCGCTTTCGCGAAGATGGCGTCTCGTGGACAAGCAGCATATTCTGAAGCAGCAACTATAGTAGCATCATTTACTGGTGAGGAGCAAGCTATAGCTTTATACAATGAATCCTTAAACAAAGCATATAAGAGTGGTGTCCAAGGAGGAGTGGCTGCTGGTTTAGGCCTTGGTTCGCTTCGATTGATTGCTTTCAGCACTTATGCTTTGGGTGTATGGTTTGGAGGTAAGATGGTGTTAGAGAAAGGCTATACAGGAGGTGAAGTCATGAGTGTGTTTTTTGCAGTATCAATAGGCTCATTGACTCTGGGGCAGGCATCTCCATGCTTAACTGCAATTGCTTCAGGACAAGCCGCGGCCTATAAAATTTTTGAAACAATAAATAGACAGCCGGATATTGATTCTTATGATCCGGCTGGTCGGATTCTAGATGATATTTCCGGAGATATAGAACTTAGAGATGTTTGCTTTAGTTATCCTACAAGACCAGATGAACTCATATTCAATGGATTTTCCATTTCAATATTGAGTGGCAGTACTGCAGCTTTGGTAGGACAAAGTGGGAGTGGGAAATCAACAGTTATTAGTTTGATAGAGAGATTTTATGATCCACAGGCTGGTGAAGTTCTCATTGATGGCATCAACCTCAGAGAATTTCAACTGAAATGGATCAGACAGAAGATAGGCCTAGTTAGCCAGGAGCCGGTTCTGTTCGCGTGTAGCATTAAAGAGAATATTGCCTATGGTAAGGATGGTGCAACTGATGAAGAAATCAAAGCTGCAGCAGAACTTGCTAATGCTGCTAGATTCATTGATAAATTCCCCCATGGACTTGACACAATGGTTGGTGAGCATGGAACTCAGCTTTCAGGAGGACAAAAGCAAAGAATTGCTATAGCAAGAGCAATTCTGAAAGATCCTAGAATCTTGTTACTTGATGAAGCTACAAGTGCTCTTGATGCTGAATCTGAGAGAGTGGTTCAAGAGACACTGGACAGAATAATGATTAACAGAACAACTGTTATCGTGGCGCATCGCTTAATCACAATAAGAAATGCTGACACAATTGCTGTTATTCATCAAGGAAAAGTAGTAGAAAAAGGTTCACATGATGAGCTTATTAAGGATCCTGATGGAGCTTTTAGCCAGCTTATTAGACTGCAAGAGATGAAAAAAGAGACAAAACATAATGGTGAATGCTCTGCAGATTCTGGAAGGCAATCAAGCCAACGGTTTTCATTCGTGAGGTCTTCAAGCCGAGGATCATCAGAAAATGGGAACAGCAATCATCACTCATTCAGAATATCAGATGCTATGATATCAGAAGGAGGAAATGAAGTTCTTCCTTCATCAGAATCATCACCTATACCTCCAGAAGTTCCATTTTTCAGGCTTGCTTGTCTTAACAAGCCTGAAATCCCAGTTTTGCTCATAGGGACATTGATTGCAGTTATATGTGGGACTATTTCACCTGCCCTGGGACTTGTTGTCTCGAAAATGATAAATACTTTCTTTGAACCTGCAGATAAACTTGGCAAAGATTCAAGGCTTTGGGCATTAGTATTTTTTGCCTTTAGTGTGGCTGCATTCATATTTCATCCATTGAGGTCCTACTTCTTTTCTGTGGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTTATGTGTTTCGATAAGATAATTCACATGGAAGTAGGATGGTTTGACAAAGCTGAGAATTCTAGTGGATCTCTTGGAGCAAGGTTGTCAGTTGATGCTGCTTCGCTTCGCGCTTTGTTCGGGGATGCACTTGGTGTGCTAGTTCAAGATGCTTCCACTGCAATTACAGCCTTGGTGATTGCATTCGAGGCGAACTGGCAGCTTGCTCTCATTATCCTTGCTATGTTGCCTCTTCTGATATTAAATGGACATTTACAAATCAGATCCATGAGAGGATTCCGAGCAAATGCAAAGAAGCAATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTAATGGAGTTATATCAGAAGAAATGTGAAGGACCAATGCAAACAGGCATAAGACAAGGTTTAGTCAGTGGAAGTAGTTATGGCATATCATACTTCTTTCTGTTCTGTGTCTACGGAGGCAGTTTCTACGCCGGTGGCCGGCTTGTTGAGGATGGAAAAACAACAATGTCTGAAGTTTTGCGGGTATTCTTTTGTCTTACAATGGCTGCTATAACATTATCTCAGTCCAGCCTATTGGCCCCGGGCGCGAGCAAAGCGAAAAGCTCAGCTGCTTCTGTGTTTGCCATTCTTGATCAGAAATCTAGAGTAGACTCCAGTGATAAGTCTGGAATCACATTGCAAGATGTGAAGGGAGAGATTATATTCAACCATGTCACTTTCAAGTATCCAACTAGGCCTAATGTTCATGTATTCAGAGATCTTTCCTTAACCATTCATTCAGGACAGACAGTGGCACTGGTTGGAGAAAGTGGAAGTGGGAAGTCAACAGTGATATCATTGCTGCAGAGATTTTATGAGCCAGATTCAGGTGAGATAACACTGGATGGAACAGAAATCAAGAAGCTGCAACTGAAATGGTATAGGGAGCAAATGGGACTAGTAAGCCAGGAACCTGTGTTGTTCAATGACACCATTAGAGCAAACATAGCATATGGAAAGGGAGGGAATGCAACAGAAGCAGAAATTGTTGCTGCTGCACAACTTGCCAATGCTCACAAATTCATTAGCAGTTTGCACAAGGGTTATGAGACAATAGTAGGAGAGAGAGGGATTCAGCTATCAGGGGGTCAGAAGCAGAGGGTGGCAATAGCAAGAGCAATAGTGAAGAGTCCAAAGGTATTGCTACTAGATGAAGCAACAAGTGCACTTGATGCTGAGTCTGAGAAGGTGGTTCAGGATGCACTTGACAGGGTTATGGTGGACAGAACCACCATTGTGGTGGCACATAGGTTATCAACCATTAAGGGTGCACATTTGATTGCTGTGGTTAAGAATGGTGTGATTGCTGAGAAAGGGAAACATGCTGCTTTGCTCAAAAAGGGTGGCACCTATGCTTCCTTAGTAGCATTCTTCACAACTTCTAATTCATCTTAA 3831 0.4244 MVVEEGLDGDITSCEMTGTASHTQIPDQENSQEMKGREQAPKKNKSKAKSNGTVPFYKLFSFADSWDHLLMFVGTISAVGNGVSVPLMSVLIGDTIDAFGLNGSNKQVAHEVSKVSLKFLCLGIAVFLAGFLQVACWVITGERQAARIRGLYLKAILRQDVGFFDKETNTGEVIGRMSGDTILVQEAMGEKVGQLIQYVANFSGGLTIGFIKGWLLTLVLLSSLPPLVFAGSLMTFAFAKMASRGQAAYSEAATIVASFTGEEQAIALYNESLNKAYKSGVQGGVAAGLGLGSLRLIAFSTYALGVWFGGKMVLEKGYTGGEVMSVFFAVSIGSLTLGQASPCLTAIASGQAAAYKIFETINRQPDIDSYDPAGRILDDISGDIELRDVCFSYPTRPDELIFNGFSISILSGSTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFACSIKENIAYGKDGATDEEIKAAAELANAARFIDKFPHGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLITIRNADTIAVIHQGKVVEKGSHDELIKDPDGAFSQLIRLQEMKKETKHNGECSADSGRQSSQRFSFVRSSSRGSSENGNSNHHSFRISDAMISEGGNEVLPSSESSPIPPEVPFFRLACLNKPEIPVLLIGTLIAVICGTISPALGLVVSKMINTFFEPADKLGKDSRLWALVFFAFSVAAFIFHPLRSYFFSVAGSKLIKRIRLMCFDKIIHMEVGWFDKAENSSGSLGARLSVDAASLRALFGDALGVLVQDASTAITALVIAFEANWQLALIILAMLPLLILNGHLQIRSMRGFRANAKKQYEEASQVANDAVGNIRTVASFCAEEKVMELYQKKCEGPMQTGIRQGLVSGSSYGISYFFLFCVYGGSFYAGGRLVEDGKTTMSEVLRVFFCLTMAAITLSQSSLLAPGASKAKSSAASVFAILDQKSRVDSSDKSGITLQDVKGEIIFNHVTFKYPTRPNVHVFRDLSLTIHSGQTVALVGESGSGKSTVISLLQRFYEPDSGEITLDGTEIKKLQLKWYREQMGLVSQEPVLFNDTIRANIAYGKGGNATEAEIVAAAQLANAHKFISSLHKGYETIVGERGIQLSGGQKQRVAIARAIVKSPKVLLLDEATSALDAESEKVVQDALDRVMVDRTTIVVAHRLSTIKGAHLIAVVKNGVIAEKGKHAALLKKGGTYASLVAFFTTSNSS 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00026 1276 FunFam ABC transporter B family member 1 374 623 - -
Stsc90622g00026 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 384 620 IPR003439 GO:0005524
Stsc90622g00026 1276 MobiDBLite consensus disorder prediction 1 49 - -
Stsc90622g00026 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1021 1268 IPR027417 -
Stsc90622g00026 1276 FunFam ABC transporter B family member 1 1022 1271 - -
Stsc90622g00026 1276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 622 IPR027417 -
Stsc90622g00026 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 72 349 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00026 1276 Pfam ABC transporter 403 551 IPR003439 GO:0005524
Stsc90622g00026 1276 CDD ABC_6TM_Pgp_ABCB1_D1_like 71 357 - -
Stsc90622g00026 1276 Gene3D ABC transporter type 1, transmembrane domain 58 1002 IPR036640 GO:0005524|GO:0016020
Stsc90622g00026 1276 FunFam ABC transporter B family member 1 691 995 - -
Stsc90622g00026 1276 Gene3D - 1022 1274 IPR027417 -
Stsc90622g00026 1276 FunFam Uncharacterized protein 996 1022 - -
Stsc90622g00026 1276 SMART AAA_5 1059 1252 IPR003593 GO:0016887
Stsc90622g00026 1276 SMART AAA_5 411 583 IPR003593 GO:0016887
Stsc90622g00026 1276 ProSitePatterns ABC transporters family signature. 1172 1186 IPR017871 GO:0005524|GO:0016887
Stsc90622g00026 1276 MobiDBLite consensus disorder prediction 635 665 - -
Stsc90622g00026 1276 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 711 997 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00026 1276 CDD ABC_MTABC3_MDL1_MDL2 1032 1267 - -
Stsc90622g00026 1276 Pfam ABC transporter transmembrane region 71 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00026 1276 Pfam ABC transporter transmembrane region 710 980 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00026 1276 SUPERFAMILY ABC transporter transmembrane region 58 368 IPR036640 GO:0005524|GO:0016020
Stsc90622g00026 1276 CDD ABC_6TM_Pgp_ABCB1_D2_like 702 1015 - -
Stsc90622g00026 1276 MobiDBLite consensus disorder prediction 14 30 - -
Stsc90622g00026 1276 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1032 1269 IPR003439 GO:0005524
Stsc90622g00026 1276 PANTHER ABC TRANSPORTER B FAMILY 31 625 IPR039421 -
Stsc90622g00026 1276 MobiDBLite consensus disorder prediction 31 45 - -
Stsc90622g00026 1276 Pfam ABC transporter 1051 1200 IPR003439 GO:0005524
Stsc90622g00026 1276 MobiDBLite consensus disorder prediction 626 665 - -
Stsc90622g00026 1276 SUPERFAMILY ABC transporter transmembrane region 698 1012 IPR036640 GO:0005524|GO:0016020
Stsc90622g00026 1276 CDD ABC_MTABC3_MDL1_MDL2 384 622 - -
Stsc90622g00026 1276 ProSitePatterns ABC transporters family signature. 523 537 IPR017871 GO:0005524|GO:0016887
Stsc90622g00026 1276 Gene3D - 374 623 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00026 Stsc-Chr90622 176816 181984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00026 39 1267 Calmodulin-binding Proteins AT2G36910 43.710 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00026 K05658 - gmx:100777713 1794.63