Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00025 ATGGAAGGTAGTGATAATACTATTGCGAGTTCTTCGAAAGTAGTTGTAGACCCTGAGATGAAGAAGCAAGATCCAAATAAGGGAAAGGAGAAAGATGAAGGCAGAAACACTGTGCCCTTATACAAGCTTTTCTCATTTGCTGATCGTTTGGATCATTTGTTGATGCTTGTTGGAACAATTGGTGCTATTGGTAATGGAATCTCCATGCCATTAATGACTCTAATATTTGGGAATATGATCAATGCATTTGGAGGAAACTCAGACACCAAAGAAGTTGTTGATGAAGTTTCTAAGGTGTCACTGAAATTTGTGTACTTGGCCATAGGAACCTTTTTCGCATCAGTTATGCAGGTGACTTCTTGGATGGTTACTGGGGAGAGACAGGCCGCAAGAATTAGAGGCTTATACCTTCAAACAATCTTGAGGCAAGATGTTAGCTTCTTCGACAAGGAAACTAACACCGGCGAGGTTGTTGGAAGAATGTCCGGTGATACTGTCCTTATTCAAGACGCCATGGGTGAGAAGATAGGGCAGTTTATACAGTTGGTGGCAACATTCTTTGGAGGTTTTGTCATAGCATTCATCAAAGGATGGCTCCTATCAGCTGTGATGCTTTCTTCTATTCCACTTCTTGTGTTGTCTGGTGCTGCAATGACCATAGTGATTCAAAAGGCATCGTCTCGCGGACAAACAGCATATGCTGCTGCAGCAAGTGTAGTAGAGCAGACTATAGGCTCGATTCGAACGGTTGCATCATTCACCGGGGAGAAGCAAGCTGTAACTAAGTATAATCAGTCATTAATCAAAGCTTACAAGACCAGTGTTCAAGAGGCCATTGCTTCTGGTTTGGGTTTTGGAGTACTCTATTTTGTTATTATAGCTACTTATGGTTTGGCTATATGGTATGGCGCCAAAATGATTATAGAGAAAGGATACAATGGAGGCGATGTTATCACTGTAATCTTTGCTCTATTGACTGGATCCATGTCTCTTGGTCAAGCATCGCCGAGCCTTAGCGCGTTTGCGGCTGGGCAAGCGGCGGCGTTTAAGATGTTTGAGACTATCAAGAGGAAGCCGGAGATCGATGCTTCGGATCCCAACGGTCTAAAGCTCGATGACATTCGGGGAGACATAGAGCTTAGGGAGGTCAGCTTTAGCTATCCAACAAGGCCAGATGAACTGATATTCAATGGCTTTTCGCTTTCTATACCGAGTGGAACCACTGCAGCTCTGGTGGGACAGAGTGGGAGTGGGAAATCAACAGTTGTTAGCTTGATTGAGAGATTCTATGATCCACAGGCTGGTGAAGTTCTTATTGATGGTATCAACCTCAAAGAGTTTCAGCTGAAATGGATCAGGCAGAAAATTGGCCTAGTTAGCCAGGAGCCAGTTCTCTTTGCTGGTAGCATTAAAGAGAACATAGCTTATGGAAAAGAAGGCGCAACCGATGAAGAAATCCGAGCCGCAGCAGAACTCGCTAATGCTGCAAAATTCATAGACAAGCTTCCTAAGGGTTTGGATACAATGGTTGGCGAGCATGGAACTCAGCTCTCTGGAGGTCAAAAGCAGAGAGTTGCAATAGCAAGAGCAATTCTGAAAGATCCAAGAATCTTGCTTCTTGATGAAGCTACAAGTGCGCTTGATGCCGAATCTGAGAGGATAGTGCAGGAGGCATTGGACAGAATCATGGTGAACAGAACAACTGTAATCGTTGCGCATCGATTAAGCACTATAAGAAATGCTGATACCATTGCTGTTATTCATCAAGGAAAAATAGTAGAAAGAGGTTCGCATTCTGAGCTCACCGGTGATCCTGACGGAGCCTATAGCCAACTAATTCGGCTTCAAGAAGTTCATGGCTCGAATTACAAAGACAAGCCAGAAAGTATTTTACATTCTGGAAGAGTATCTTCTTCGATGAGATCTTCTTCGATAAGATCTCTAAGCCATCAAGAATCATTTGGTGTTGGAAACAGCGGCCGCCACTCATTCACAGCGCCTTTTCCTGTTCCTACAGCAGTTGGCATCGTGGAACCTCCACCTGAAGCTCCTACTTCTTCAACTGTCTCACCTTCGCCACCGGAAGTTCCTCTTTCTCGTCTCGCTACTCTAAACAAGCCTGAGATTCCGGTCTTACTGATGGGATCAGTAGCTGCAGTTATAAGTGGATTGATATTTCCGGCTTTCGGCCTAATGCTTTCAAAAATGATCACAGTTTTCTATGAGCCGGCTCACGAGCTTCGCCATGATGCGAGAATTTGGGCACTGGTGTTTGTAGGACTTGGAGCATTGTCATTGTTTGTGTATCCTTCTAGATTCTACCTTTTCGCCGTGGCCGGTGGGAAGTTGATTAAGAGGATCCGGGAGATGTGTTTTGAGAAAGTGGTTAACATGGAGGTGAGCTGGTTCGATGAAGCTGATCATTCTAGTGGAGCCATTGGTGCTAGGCTTGCTACCGACGCGGCTTCGATTCGAGCTATAGTTGGAGATGCACTTGGCTTGATGGTTGAAAACATAGCTACAGCAGCTGCTGGATTAGTAATTTCTTTTGCAGCTAGCTGGCAACTTGCTCTTGTAGTTCTTGCTTTGGCGCCTCTGTTAGGTCTAAATGGATACGTGCAAGTCAAGGTCTTGACAGGATTCAGCTCTGATGCAAAGAAATTGTATGAGGAAGCAAGTCAAGTGGCAAATGATGCTGTAGGGAGTATTAGAACAGTTGCTTCCTTCTGTGCTGAAGAGAAGGTGATGGACTTATACCGCGAAAAATGCGAAGGGCCGATCAAGACAGGGATAAGAAGGGGAATAATCAGTGGTGTAGGTTTTGGATTATCATTCTTCATGATGTATTGTGTTTATGCAACTAGTTTCTATGCCGGTGCTCGGCTCGTTGATGATGGAAAAGCAACATTCTCAGATGTCTTCAGAGTCTTCTTTGCTCTCAGCATGGCAGCTATTGGAATCTCTCAATCTAGCTCCTTAGTCCCTGATTCGACCAAAGCAAAAAGTGCTGCAGCTTCTATTTTCGCCATTCTTGATGGAAAATCGCGAATAGACCCCAGTGATGAATCAGGAATAACCTATGAAGCTAAGGGAGAAATTGAGCTTCACCATGTCAGTTTCAAGTATCCAACTAGGCCTGATATTCAAATATTCAGAGATCTTAACTTGACCATTCATAGTGGCAAGACAGTTGCACTGGTTGGAGAAAGTGGAAGTGGAAAATCAACAGTTATAGCGTTGCTACAAAGATTTTATGACCCTGATTCAGGTCACATTACACTTGATGGAAAGGATATCCAAACACTTCAAGTTAAGTGGCTAAGGCAACAGATGGGTTTGGTTAGCCAAGAGCCTGTGTTGTTCAACGACACGATCCGAGCCAACATCGCCTATGGAAAAGGAGGAGATGCAACAGAAGCAGAGATCATAGCTGCAGCAGAACTTGCTAATGCTCACAAGTTCATTAGCAGTTTGCAGCAGGGCTATGACACGGTTGTAGGCGAGAGAGGTGTTCAGTTATCCGGTGGCCAGAAGCAGCGAGTGGCGATCGCAAGAGCCATAGTTAAGAATCCAAAGATATTGCTTCTGGATGAAGCAACAATGTTTAAGAATGGTGTTATTGCTGAGAAGGGTAAGCATGAAGCATTGCTCAATAAGGGAGGTGACTATGCTTCATTGGTAGCATTGCACACAAGTGCTTCATCTTAG 3708 0.4434 MEGSDNTIASSSKVVVDPEMKKQDPNKGKEKDEGRNTVPLYKLFSFADRLDHLLMLVGTIGAIGNGISMPLMTLIFGNMINAFGGNSDTKEVVDEVSKVSLKFVYLAIGTFFASVMQVTSWMVTGERQAARIRGLYLQTILRQDVSFFDKETNTGEVVGRMSGDTVLIQDAMGEKIGQFIQLVATFFGGFVIAFIKGWLLSAVMLSSIPLLVLSGAAMTIVIQKASSRGQTAYAAAASVVEQTIGSIRTVASFTGEKQAVTKYNQSLIKAYKTSVQEAIASGLGFGVLYFVIIATYGLAIWYGAKMIIEKGYNGGDVITVIFALLTGSMSLGQASPSLSAFAAGQAAAFKMFETIKRKPEIDASDPNGLKLDDIRGDIELREVSFSYPTRPDELIFNGFSLSIPSGTTAALVGQSGSGKSTVVSLIERFYDPQAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFAGSIKENIAYGKEGATDEEIRAAAELANAAKFIDKLPKGLDTMVGEHGTQLSGGQKQRVAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTIRNADTIAVIHQGKIVERGSHSELTGDPDGAYSQLIRLQEVHGSNYKDKPESILHSGRVSSSMRSSSIRSLSHQESFGVGNSGRHSFTAPFPVPTAVGIVEPPPEAPTSSTVSPSPPEVPLSRLATLNKPEIPVLLMGSVAAVISGLIFPAFGLMLSKMITVFYEPAHELRHDARIWALVFVGLGALSLFVYPSRFYLFAVAGGKLIKRIREMCFEKVVNMEVSWFDEADHSSGAIGARLATDAASIRAIVGDALGLMVENIATAAAGLVISFAASWQLALVVLALAPLLGLNGYVQVKVLTGFSSDAKKLYEEASQVANDAVGSIRTVASFCAEEKVMDLYREKCEGPIKTGIRRGIISGVGFGLSFFMMYCVYATSFYAGARLVDDGKATFSDVFRVFFALSMAAIGISQSSSLVPDSTKAKSAAASIFAILDGKSRIDPSDESGITYEAKGEIELHHVSFKYPTRPDIQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGKDIQTLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGVQLSGGQKQRVAIARAIVKNPKILLLDEATMFKNGVIAEKGKHEALLNKGGDYASLVALHTSASS 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00025 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 367 616 IPR027417 -
Stsc90622g00025 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1026 1229 IPR027417 -
Stsc90622g00025 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 378 614 IPR003439 GO:0005524
Stsc90622g00025 1235 MobiDBLite consensus disorder prediction 1 34 - -
Stsc90622g00025 1235 Gene3D - 368 617 IPR027417 -
Stsc90622g00025 1235 Gene3D - 1024 1200 IPR027417 -
Stsc90622g00025 1235 ProSitePatterns ABC transporters family signature. 517 531 IPR017871 GO:0005524|GO:0016887
Stsc90622g00025 1235 FunFam ABC transporter B family member 28 1026 1202 - -
Stsc90622g00025 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 56 343 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00025 1235 Pfam ABC transporter transmembrane region 713 982 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00025 1235 Pfam ABC transporter transmembrane region 55 329 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00025 1235 SMART AAA_5 405 591 IPR003593 GO:0016887
Stsc90622g00025 1235 SMART AAA_5 1060 1234 IPR003593 GO:0016887
Stsc90622g00025 1235 MobiDBLite consensus disorder prediction 17 34 - -
Stsc90622g00025 1235 Pfam ABC transporter 1052 1200 IPR003439 GO:0005524
Stsc90622g00025 1235 ProSitePatterns ABC transporters family signature. 1173 1187 IPR017871 GO:0005524|GO:0016887
Stsc90622g00025 1235 Pfam ABC transporter 397 545 IPR003439 GO:0005524
Stsc90622g00025 1235 Gene3D ABC transporter type 1, transmembrane domain 42 618 IPR036640 GO:0005524|GO:0016020
Stsc90622g00025 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 713 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc90622g00025 1235 FunFam ABC transporter B family member 9 42 373 - -
Stsc90622g00025 1235 CDD ABC_MTABC3_MDL1_MDL2 378 616 - -
Stsc90622g00025 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1033 1229 IPR003439 GO:0005524
Stsc90622g00025 1235 SUPERFAMILY ABC transporter transmembrane region 700 1012 IPR036640 GO:0005524|GO:0016020
Stsc90622g00025 1235 SUPERFAMILY ABC transporter transmembrane region 42 362 IPR036640 GO:0005524|GO:0016020
Stsc90622g00025 1235 FunFam ABC transporter B family member 1 692 997 - -
Stsc90622g00025 1235 FunFam Uncharacterized protein 998 1024 - -
Stsc90622g00025 1235 CDD ABC_6TM_Pgp_ABCB1_D1_like 55 339 - -
Stsc90622g00025 1235 PANTHER ABC TRANSPORTER B FAMILY 21 768 IPR039421 -
Stsc90622g00025 1235 FunFam ABC transporter B family member 1 368 617 - -
Stsc90622g00025 1235 CDD ABC_6TM_Pgp_ABCB1_D2_like 704 1017 - -
Stsc90622g00025 1235 Gene3D ABC transporter type 1, transmembrane domain 694 1000 IPR036640 GO:0005524|GO:0016020
Stsc90622g00025 1235 Gene3D ABC transporter type 1, transmembrane domain 1001 1023 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00025 Stsc-Chr90622 168628 173574 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00025 25 617 Calmodulin-binding Proteins AT2G36910 37.248 6.63e-118 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00025 K05658 - gmx:100800293 1859.34