LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90622g00012	ATGAGATCTTCATCAGAGGCTTCATCGTCTCCATCATGCAGATCGAAAAATCACAGCAATCTGAGCTCAAATCTCGTTTCTTCAGATTCGGATTCACTCGATACCAAGACGCCGGAGAAGTCACTTGAGCTCACGCGCCGCACGCGCAACCATGGCGTCGCGCTCTCGGTGTCGGAGGTGCGGCGAGTCGCCAAGGGTCTCCAGGACCAGCGCGAGCGTGAAACGATGTCGCTTGGCGGCAAATCTGCGAGGAGGCAGATCCAGCTGTCTTCGCCGAGCAAACCACCAAAGACAAGTTCCGATGAAGAAGAAGCCTTCAAGCTTCCCCAAAAGTATGAGATTTTGGGCGAGTATTTTGCTAGGTTGGATTGTTCGATTCGATTGCTGCGGAGGAAAGGAATGACGCCGTCTTTCGCGAAAATCAGCCACACCATTGAAAGTTTAACGGATAGGAGGTTTACACTTGGTCATTTGGCTCAGTTGAAGTTTTTGTTGCCTGAGGCAATTGTGACTAAGAAAGTGATGATGTTTGATGAGAAGACAAGTTGTATGAAGCCAGATCTGCATGTCACTATTAACTATGATGCGGTGGAGTATGATGCAAAGTCGCCAACCGAAGGCGGCCGGAGCATGGTTTTGAGGAAGTTGTTCCGTGCGCGGCTGAGAGATTTTGTTGAATCCCATCCTGAGGGAGATGAGATTCCGGAAGATGCACTACCGGAGCCATTCAACCCGAAGCAACATAATCTATCAGACATATTGAAAAGGCCTTTCTCATCTAAGGAGATAAAATCATCGGTAGTCATTCGGGATAATGAGACTAAAATAGAGTTATCAGAACCTGTCAGGGCATCAATTGAACCCCTTAACCAGAAACCATCAGTAGCCTCTCATGTGCCTAGATCTTTCACAAGAAGGTTTTCTCAGATGAAGGAAAATGGAACAGATACTAATGCACAAGAAAAATTGCCATCAGATTCATTCCAAACTGTGGTTCTACCGGATTCAGAGTCAAACCTGAGTGGAAAACCGACCTCAGAAGGAGCCAGCAATGAAGTATGCCTAACAAATTGTTCTTCATCTAGTGCTCCACCTTGTACTCCATGCAAAACCATTGAACATGCAGAAAATAATGATGGGTACCGAAAAAGCTTTGGTGCTGTGTCAACCCCAGATGTTAAATGTAATTCTACTCCAGCCAGCATAACACCTGCATTGCATACGCCTAAGAGACATTTCATGAGTCCAGATGATAACTCTTCCACCACTACTAGCAAGTTGGTTAGGCGTCCGCCTCTATCAAGGTCGTTGTTTGATGATGATCTTTCGGATGTTCTCCCTCAGAGTCTTCTGCAATCGATTAGAGAAAAGGAAATACAAGCAATGGAGGAAAGAGATCCAGCTATCTCACAAGCAAAGAGACGGAAAAGAATGATCGCCGGCCTACCTAAGATGTTTAATATGATTCACCTCTTGCTCCAGTCAATGAACCGTTCTGTTATCACGAAATCGGAGCTTGTGAGCAAGATCATCTCTGGCAACTGTGGTATTGTTGACAGAGGAGAAGTAGAAGAGCAACTGAATTTGTTGCTAGAATTAGCACCAGAATGGATTTCTGAGAAGTTGGCCTCTAGTGGGGATTTCCTTTTCTGCATAAATAAAATGGTGGACGCCATGGCCATACGCTCAGCACTTGAAGAAGCAAAATGA	1710	0.4561	MRSSSEASSSPSCRSKNHSNLSSNLVSSDSDSLDTKTPEKSLELTRRTRNHGVALSVSEVRRVAKGLQDQRERETMSLGGKSARRQIQLSSPSKPPKTSSDEEEAFKLPQKYEILGEYFARLDCSIRLLRRKGMTPSFAKISHTIESLTDRRFTLGHLAQLKFLLPEAIVTKKVMMFDEKTSCMKPDLHVTINYDAVEYDAKSPTEGGRSMVLRKLFRARLRDFVESHPEGDEIPEDALPEPFNPKQHNLSDILKRPFSSKEIKSSVVIRDNETKIELSEPVRASIEPLNQKPSVASHVPRSFTRRFSQMKENGTDTNAQEKLPSDSFQTVVLPDSESNLSGKPTSEGASNEVCLTNCSSSSAPPCTPCKTIEHAENNDGYRKSFGAVSTPDVKCNSTPASITPALHTPKRHFMSPDDNSSTTTSKLVRRPPLSRSLFDDDLSDVLPQSLLQSIREKEIQAMEERDPAISQAKRRKRMIAGLPKMFNMIHLLLQSMNRSVITKSELVSKIISGNCGIVDRGEVEEQLNLLLELAPEWISEKLASSGDFLFCINKMVDAMAIRSALEEAK	569

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90622g00012	569	FunFam	CDT1-like protein a chloroplastic	439	569	-	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	33	47	-	-
	Stsc90622g00012	569	Pfam	DNA replication factor Cdt1 C-terminal domain	449	541	IPR032054	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	1	32	-	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	64	79	-	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	228	251	-	-
	Stsc90622g00012	569	SUPERFAMILY	"Winged helix" DNA-binding domain	100	243	IPR036390	-
	Stsc90622g00012	569	PANTHER	DNA REPLICATION FACTOR CDT1	9	569	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Stsc90622g00012	569	Pfam	DNA replication factor CDT1 like	108	228	IPR014939	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	401	432	-	-
	Stsc90622g00012	569	CDD	Cdt1_m	97	281	IPR014939	-
	Stsc90622g00012	569	CDD	Cdt1_c	446	566	IPR032054	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	415	430	-	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	81	96	-	-
	Stsc90622g00012	569	SMART	CDT1_2	108	241	IPR014939	-
	Stsc90622g00012	569	Gene3D	-	440	569	IPR038090	-
	Stsc90622g00012	569	MobiDBLite	consensus disorder prediction	1	104	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90622g00012	Stsc-Chr90622	73745	76690	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90622g00012	439	567	Core DNA Replication Machinery Family	AT2G31270	58.915	9.05e-43	159

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90622g00012	K10727		-	cave:132166775	449.899