Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc90622g00007 ATGGTTGCGAACTTATGCCGTAATAGTAATGATATTAATGGTGAGGTATCATTTTCTGCTTCGATGCAAGCCGCAATTGCCTCGGGAAGAAATCCCGAAACTTCTAGTCACTCTATGCACACTATTAACTCGGAAGGGTATTCGATAGATCAGTCTCCTCCTGTCAAAGAGGAGAAGAAGCGTAGCTTAAGTTCCTCAGCGATATGTGGCATGATGTCCCCAAAAGGTTTTGCTTCTCCATGTCCAAGTTCATGTAGTGAGCAATTTGAGAGGTCCTCCGAGCCGGCTAAGAACAGCAAGAAAAGGGCTAGGCCTGGGGAAAGTTGTAGGCCAAGGCCAAGGGACAGACAGTTGATCCAGGATCGCATTAAGGAGTTGAGAGAATTGGTGCCGAATGGAGCTAAGTGCAGTATCGATTCACTGCTCGAGTGCACGATAAAGCACATGCTTTTCCTCCAGAGCGTAACTAAGCATGCTGACAAGCTAAATAAAGTTGCGGATGCATCAAAGACGAAGCGGCATCACACGGAAACAGATGTTCTCGGTACCTCTGGTTATCAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGCCATCTGAAAGTTAGGTCAATATTGGTCGAGAATCTGAATAAGAATGGGCAGATGCTGGTTGAGGTGAGTACAGGTTGA 672 0.4658 MVANLCRNSNDINGEVSFSASMQAAIASGRNPETSSHSMHTINSEGYSIDQSPPVKEEKKRSLSSSAICGMMSPKGFASPCPSSCSEQFERSSEPAKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSVTKHADKLNKVADASKTKRHHTETDVLGTSGYQQGSSWAMEVGGHLKVRSILVENLNKNGQMLVEVSTG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc90622g00007 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 103 152 IPR011598 GO:0046983
Stsc90622g00007 223 MobiDBLite consensus disorder prediction 27 50 - -
Stsc90622g00007 223 MobiDBLite consensus disorder prediction 93 117 - -
Stsc90622g00007 223 MobiDBLite consensus disorder prediction 83 117 - -
Stsc90622g00007 223 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 2 220 IPR043561 GO:0003700|GO:0006355
Stsc90622g00007 223 MobiDBLite consensus disorder prediction 27 65 - -
Stsc90622g00007 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 158 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc90622g00007 Stsc-Chr90622 42236 43401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc90622g00007 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 53.182 1.81e-58 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc90622g00007 - - adu:107473585 411.764