LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc90622g00007	ATGGTTGCGAACTTATGCCGTAATAGTAATGATATTAATGGTGAGGTATCATTTTCTGCTTCGATGCAAGCCGCAATTGCCTCGGGAAGAAATCCCGAAACTTCTAGTCACTCTATGCACACTATTAACTCGGAAGGGTATTCGATAGATCAGTCTCCTCCTGTCAAAGAGGAGAAGAAGCGTAGCTTAAGTTCCTCAGCGATATGTGGCATGATGTCCCCAAAAGGTTTTGCTTCTCCATGTCCAAGTTCATGTAGTGAGCAATTTGAGAGGTCCTCCGAGCCGGCTAAGAACAGCAAGAAAAGGGCTAGGCCTGGGGAAAGTTGTAGGCCAAGGCCAAGGGACAGACAGTTGATCCAGGATCGCATTAAGGAGTTGAGAGAATTGGTGCCGAATGGAGCTAAGTGCAGTATCGATTCACTGCTCGAGTGCACGATAAAGCACATGCTTTTCCTCCAGAGCGTAACTAAGCATGCTGACAAGCTAAATAAAGTTGCGGATGCATCAAAGACGAAGCGGCATCACACGGAAACAGATGTTCTCGGTACCTCTGGTTATCAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGCCATCTGAAAGTTAGGTCAATATTGGTCGAGAATCTGAATAAGAATGGGCAGATGCTGGTTGAGGTGAGTACAGGTTGA	672	0.4658	MVANLCRNSNDINGEVSFSASMQAAIASGRNPETSSHSMHTINSEGYSIDQSPPVKEEKKRSLSSSAICGMMSPKGFASPCPSSCSEQFERSSEPAKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSVTKHADKLNKVADASKTKRHHTETDVLGTSGYQQGSSWAMEVGGHLKVRSILVENLNKNGQMLVEVSTG	223

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc90622g00007	223	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	103	152	IPR011598	GO:0046983
	Stsc90622g00007	223	MobiDBLite	consensus disorder prediction	27	50	-	-
	Stsc90622g00007	223	MobiDBLite	consensus disorder prediction	93	117	-	-
	Stsc90622g00007	223	MobiDBLite	consensus disorder prediction	83	117	-	-
	Stsc90622g00007	223	PANTHER	TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED	2	220	IPR043561	GO:0003700\|GO:0006355
	Stsc90622g00007	223	MobiDBLite	consensus disorder prediction	27	65	-	-
	Stsc90622g00007	223	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	116	158	IPR036638	GO:0046983

Showing 1 to 7 of 7 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc90622g00007	Stsc-Chr90622	42236	43401	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc90622g00007	1	220	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G31280	53.182	1.81e-58	194

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc90622g00007	-		-	adu:107473585	411.764

Showing 1 to 1 of 1 entries