Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc905g00005 ATGGAAGACGATTTCGAGTTACCAACTGCCGGCAACAACTTCGACGATGACATGGAGATGCCCGACGAGCTGGACGAGGTAGACTCTGCGCTCAAGGTTGGAGACGAGAAGGAGATCGGAAAAACCGGCCTCAAGAAGAAGCTTGTTAAGGAAGGTGAAGGCTGGGAAACGCCTTCCAAAGGAGACGAAGTTGAAGTGCATTACACGGGAACATTGCTTGATGGAACCAAATTTGATTCGAGCCGTGACAGGGGCACCCCTTTCAAGTTCAAGCTTGGCCAAGGTCAAGTGATCAAGGGATGGGATGAGGGAATCAAAACCATGAAGAAGGGTGAGAATGCTGTCTTCACAATTCCTCCAGAATTGGCATACGGTGAATCTGGATCTCCTCCCACCATTCCTCCCAATGCAACTCTGCAGTTTGATGTGGAGTTGCTGTCTTGGACCAGCGTCAAGGACATTTGCAAAGATGGAGGGATATTCAAGAAGATTGTCACTGAAGGAGAGAAATGGGAAAATCCCAAGGACCTTGATCAAGTGCTTGTTAAATATGTGGCTAAGCTTGAAGATGGGACGGTTGTTTCAAAATCTGATGGGGTGGAGTTCACCGTGGAAGAAGGTTATTTCTGTCCTGCATTGGCCAAGGCTGTAAAGACAATGAAGAAAGGAGAGAAAGTCATATTGACCGTGAAGCCAGAATATGCGTTTGGTGAGAATGGAAGGCCAGCATCAGGAGATGAAGGCGCTGTGCCTCCGAATGCTTCGCTCCAAATTGATCTCGAGTTGGTATCTTGGAAGTCTGTATCTGACATAACCAAGGATAAGAAGGTTCTCAAGAAAACCTTGAAGGAGGGAGAGGGATACGAACGTCCCAATGAAGGAGCTGTGGTTCAAGTGAAACTTATCGGTAAGCTGCAAGATGGGACTGTTTTTGTGAAGAAGGGTCACGATGATGAGCAGCCATTTGAGTTCAAAATTGATGAGGAGCAAGTAATTGATGGACTTGATAAAGCGGTGATGAACATGAAGAAAGGGGAAGTTGCATTAGTGACCATACATCCTGAATACGCTTTTGGGCCATCTGGTTCAACTCAGGAATTGGCCACCGTTCCTCCCATCTCCACTGTGTACTATGAAGTTGAGCTGGTTTCCTTTGTAAAAGAAAAGGAATCGTGGGATTTGAATACACCGGAGAAGATAGAGGCAGCCGGAAAGAAGAAGGAAGAAGGGAATGCATTGTTCAAGGCTGGCAAATATGAAAGAGCATCAAAGAGATATGAAAAGGCTATAAGGTACATTGAGTATGATTCCTCCTTCAGCGACGAGGAGAAACAGAAGACAAAGGTGTTGAAGATCACATGCAATCTTAACAATGCAGCTTGTAAGCTGAAGCTCAAGGACTACAAGCAAGCAGAAAAGTTGTGCACTAAGGTACTGGAGTTAGATAGTAGGAATGTGAAGGCACTATATCGGAGGGCACAAGCATATATCCAACTTGTGGACTTGGATTTGGCTGAGATGGACATTAAGAAAGCTCTTGAGATTGAGCCAGACAATAGGGATGTGAAGATTGAGTACAAAATTTTGAAGGATAAAGTGAGAGAATACAACAAGAAGGATGCACAATTCTATGGCAACATATTTGCAAAGATGAACAAAATGGAACAAGCCAGAAGTGCTGCTTCAGCAAAGCAGGAGCCTGTCCCAATGGCTGTTGATAGCAAAGCTTAA 1731 0.45 MEDDFELPTAGNNFDDDMEMPDELDEVDSALKVGDEKEIGKTGLKKKLVKEGEGWETPSKGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGEKWENPKDLDQVLVKYVAKLEDGTVVSKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVILTVKPEYAFGENGRPASGDEGAVPPNASLQIDLELVSWKSVSDITKDKKVLKKTLKEGEGYERPNEGAVVQVKLIGKLQDGTVFVKKGHDDEQPFEFKIDEEQVIDGLDKAVMNMKKGEVALVTIHPEYAFGPSGSTQELATVPPISTVYYEVELVSFVKEKESWDLNTPEKIEAAGKKKEEGNALFKAGKYERASKRYEKAIRYIEYDSSFSDEEKQKTKVLKITCNLNNAACKLKLKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEMDIKKALEIEPDNRDVKIEYKILKDKVREYNKKDAQFYGNIFAKMNKMEQARSAASAKQEPVPMAVDSKA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc905g00005 576 SMART tpr_5 403 436 IPR019734 GO:0005515
Stsc905g00005 576 SMART tpr_5 452 485 IPR019734 GO:0005515
Stsc905g00005 576 SMART tpr_5 486 519 IPR019734 GO:0005515
Stsc905g00005 576 SUPERFAMILY TPR-like 398 552 IPR011990 GO:0005515
Stsc905g00005 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 294 386 IPR001179 GO:0003755
Stsc905g00005 576 Coils Coil 519 539 - -
Stsc905g00005 576 MobiDBLite consensus disorder prediction 1 20 - -
Stsc905g00005 576 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 158 269 - -
Stsc905g00005 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 266 IPR001179 GO:0003755
Stsc905g00005 576 FunFam Peptidylprolyl isomerase 391 546 - -
Stsc905g00005 576 SUPERFAMILY FKBP-like 269 403 - -
Stsc905g00005 576 Gene3D Tetratricopeptide repeat domain 389 546 IPR011990 GO:0005515
Stsc905g00005 576 Gene3D - 35 151 IPR046357 GO:0003755
Stsc905g00005 576 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 61 149 IPR001179 GO:0003755
Stsc905g00005 576 FunFam Peptidylprolyl isomerase 267 388 - -
Stsc905g00005 576 SUPERFAMILY FKBP-like 152 269 - -
Stsc905g00005 576 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
Stsc905g00005 576 Gene3D - 267 388 IPR046357 GO:0003755
Stsc905g00005 576 FunFam Peptidylprolyl isomerase 34 152 - -
Stsc905g00005 576 Pfam Tetratricopeptide repeat 487 519 IPR019734 GO:0005515
Stsc905g00005 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 172 263 IPR001179 GO:0003755
Stsc905g00005 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 56 146 IPR001179 GO:0003755
Stsc905g00005 576 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 288 383 IPR001179 GO:0003755
Stsc905g00005 576 SUPERFAMILY FKBP-like 39 153 - -
Stsc905g00005 576 FunFam Peptidylprolyl isomerase 153 266 - -
Stsc905g00005 576 Gene3D - 152 266 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc905g00005 Stsc-Chr905 18139 21267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc905g00005 1 576 Calmodulin-binding Proteins AT5G48570 73.935 0.0 866
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc905g00005 K09571 - gmx:100819747 979.163