Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc902g00003 ATGCTTTGCTTGCGCACCAACTGGCTCGGGAAAAACCTTCGCATTTGTGTGTCCTATGCTTATGAAGCTCAAGGTGTACCAGAAAAGGGTGCCATTCGAGCTGTTATACTTTGTCATACGCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAACTTGCCAAGGGAAAAAAGTTTCGTATCAAGTTAATGACTAAACATCTTTCTAGAAATGCTGATTTTTCGAAATTTCCATGTGATATACTTATATCCACGCCACTTCGTTTACGCTTGGCTATCCGGAGGAAGAAAGTTGATCTCAGCAGAGTTGAGTTTCTTGTCTTGGATGAGTCAGATAAGCTGTTTGAGCCCGAACTGTTTAAGCAGATTGATTCTATTATCAAAGCATGTTCAAACCCCTCAATTATACGCTCACTATTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGTGCTCGAGAGCTCATGCATGATGCTGTTCGGGTAATTATTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGCTATTTGTGCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGAAAATATTAGAGTGGATGTCATCCATTCTGATTTGTCTCAAGAACAGAGAGAAAACGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCGGATTCAGCTGCCGCTTATATCCACAGGATTGGTCGCTCTGGCAGAGCAGGGAGGACAGGAGAGGCAATTACGTTGTACACAGAGGATGACATTCCATTCTTGCGGAATGTAGCTAATTTAATGGCAGCATCAGGTTGTGAGGTTCCATCCTGGCTCATGGACTTGCGTAAAAAGAAGTGGAGGAAACACAGGCCAAAAAGAGACTCAATCTCAACCAAACCAGATATATGA 1068 0.4223 MLCLRTNWLGKNLRICVSYAYEAQGVPEKGAIRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEFLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIIGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLLFVQSKERAKELYGELAFENIRVDVIHSDLSQEQRENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRTGEAITLYTEDDIPFLRNVANLMAASGCEVPSWLMDLRKKKWRKHRPKRDSISTKPDI 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc902g00003 355 SMART helicmild6 215 296 IPR001650 -
Stsc902g00003 355 Gene3D - 163 339 IPR027417 -
Stsc902g00003 355 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 29 341 - -
Stsc902g00003 355 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 174 335 IPR001650 -
Stsc902g00003 355 Pfam DEAD/DEAH box helicase 23 150 IPR011545 GO:0003676|GO:0005524
Stsc902g00003 355 Pfam Helicase conserved C-terminal domain 193 296 IPR001650 -
Stsc902g00003 355 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 163 IPR014001 -
Stsc902g00003 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 314 IPR027417 -
Stsc902g00003 355 Gene3D - 14 162 IPR027417 -
Stsc902g00003 355 SMART ultradead3 9 178 IPR014001 -
Stsc902g00003 355 CDD SF2_C_DEAD 175 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc902g00003 Stsc-Chr902 5099 8808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc902g00003 32 334 Eukaryotic Initiation Factors Gene Family AT3G19760 31.148 4.02e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc902g00003 K14779 - gmx:100800969 608.216