LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc902g00002	ATGGCAAACGACTCGTCGTTTTTGTTCTCCGGCATTCGTTTCGACAGAAAGAAGTTCGGAAACGACATTGCCAGGTTCGAGAACAAGAACAAACCCGCTGATGACGATACTTCCCTCAAGATTACGGAACCCGTTGAACTCCAAACCGAGAACACGACGCCGGAACCGCTCCAACAGAAACCCCCTTCTTCCAAGAAGCGGAAGCGCAAGGGAACCGCTTCTGAGGCGGTTGAAGGATTCAGTGTATTTAGAAGTTCTGCTTCTGCGGCGGAGCCTGCGAATGATGCAGTGAAAGCTGATGATGATGAAGCCATTCAGCTGAAGAAGGAACACAATAGGCAACTTGAGCGAGATGCTATATTCAGGAAGAAGAATAACATCCATGTGGCTGGCTATAACGTGCCATCCCCACTTCAAAGTTTTGATGAGTTGAAAACTAGATACAAGTGTCCTAGATATTTATTGCGCAATGTCGCAGAACTTGGATTCAAAGAACCTACTCCAATCCAAAGGCAGGCTATTCCAGTACTTTTGCAGGATCGTGAATGCTTTGCTTGCGCACCAACTGGCTCGGGAAAAACCTTCGCATTTGTGTGTCCTATGCTTATGAAGCTCAAGGTACCAGAAAAGGGTGCCATTCGAGCTGTTATACTTTGTCATACGCGTGAATTATCTGCTCAAACATACCGAGAGTGCAAAAAACTTGCCAAGGGAAAAAAGTTTCGTATCAAGTTAATGACTAAACATCTTTCTAGAAATGCTGATTTTTCGAAATTTCCATGTGATATACTTATATCCACGCCACTTCGTTTACGCTTGGCTATCCGGAGGAAGAAAGTTGATCTCAGCAGAGTTGAGTTTCTTGTCTTGGATGAGTCAGATAAGCTGTTTGAGCCCGAACTGTTTAAGCAGATTGATTCTATTATCAAAGCATGTTCAAACCCCTCAATTATACGCTCACTATTCAGTGCCACTTTACCTGATTTTGTTGAGGATCGTGCTCGAGAGCTCATGCATGATGCTGTTCGGGTAATTATTGGCAGAAAGAATATGGCTTCTGAAACAATTAAGCAGAAGTTGATTTTTACTGGAAGTGAAGAAGGAAAACTTCTAGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGCTATTTGTGCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGAAAATATTAGAGTGGATGTCATCCATTCTGATTTGTCTCAAGAACAGAGAGAAAACGCTGTTGATAACTTCAGAGCTGGCAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCCCGGGGCATGGATTTCAAAGGAGTGAACTGTGTGATCAATTATGATTTCCCGGATTCAGCTGCCGCTTATATCCACAGGATTGGTCGCTCTGGCAGAGCAGGGAGGACAGGAGAGGCAATTACGTTGTACACAGAGGATGACATTCCATTCTTGCGGAATGTAGCTAATTTAATGGCAGCATCAGGTTGTGAGGTTCCATCCTGGCTCATGGACTTGCGTAAAAAGAAGTGGAGGAAACACAGGCCAAAAAGAGACTCAATCTCAACCAAACCAGATATATGA	1611	0.4382	MANDSSFLFSGIRFDRKKFGNDIARFENKNKPADDDTSLKITEPVELQTENTTPEPLQQKPPSSKKRKRKGTASEAVEGFSVFRSSASAAEPANDAVKADDDEAIQLKKEHNRQLERDAIFRKKNNIHVAGYNVPSPLQSFDELKTRYKCPRYLLRNVAELGFKEPTPIQRQAIPVLLQDRECFACAPTGSGKTFAFVCPMLMKLKVPEKGAIRAVILCHTRELSAQTYRECKKLAKGKKFRIKLMTKHLSRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEFLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIIGRKNMASETIKQKLIFTGSEEGKLLAIRQSFAESLNPPVLLFVQSKERAKELYGELAFENIRVDVIHSDLSQEQRENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRTGEAITLYTEDDIPFLRNVANLMAASGCEVPSWLMDLRKKKWRKHRPKRDSISTKPDI	536

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc902g00002	536	Gene3D	-	344	520	IPR027417	-
	Stsc902g00002	536	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	355	516	IPR001650	-
	Stsc902g00002	536	SMART	helicmild6	396	477	IPR001650	-
	Stsc902g00002	536	MobiDBLite	consensus disorder prediction	26	72	-	-
	Stsc902g00002	536	Pfam	DEAD/DEAH box helicase	167	331	IPR011545	GO:0003676\|GO:0005524
	Stsc902g00002	536	CDD	DEADc_DDX52	154	347	IPR044764	GO:0003724\|GO:0005524\|GO:0030490
	Stsc902g00002	536	MobiDBLite	consensus disorder prediction	42	60	-	-
	Stsc902g00002	536	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	174	344	IPR014001	-
	Stsc902g00002	536	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	143	171	IPR014014	GO:0003724
	Stsc902g00002	536	SMART	ultradead3	162	359	IPR014001	-
	Stsc902g00002	536	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	93	522	-	-
	Stsc902g00002	536	MobiDBLite	consensus disorder prediction	26	41	-	-
	Stsc902g00002	536	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	495	IPR027417	-
	Stsc902g00002	536	Pfam	Helicase conserved C-terminal domain	375	477	IPR001650	-
	Stsc902g00002	536	Gene3D	-	101	343	IPR027417	-
	Stsc902g00002	536	CDD	SF2_C_DEAD	356	486	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc902g00002	Stsc-Chr902	5099	9421	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc902g00002	137	515	Eukaryotic Initiation Factors Gene Family	AT3G19760	30.709	5.09e-54	186

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc902g00002	K14779		-	gmx:100800969	871.307