Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc8g00041 ATGCTGGATTCGGTTCTGTTGGCGCTTTTTCTGCCATGCCTTGGCATGAGCGCCGTCTTCATAGTCTACATGTGCCTTCTCTGGTACGCCACCACCCGTCACTCACCTGACGGGATACCGGTTAAGCCAGTCTCTGAAAAAGGTCTCTCCTCATCCGACCTGGAGAAGCTACCTAAGATCACCGGTAAGGAACTCGTCATGGGCACAGAATGCGCCGTCTGCCTCGATGAGATCGAGAACGAGCAACCGGCTCGCCTGGTTCCTGGTTGCAACCATGGCTTCCATGTCGAATGCGCTGATACCTGGCTCTCCAAGAACCCTCTATGTCCGGTTTGTAGAGCCAAGCTTGACCCTCAGCTCTTCACTCATCAGAGCCAGTGCTGA 384 0.5469 MLDSVLLALFLPCLGMSAVFIVYMCLLWYATTRHSPDGIPVKPVSEKGLSSSDLEKLPKITGKELVMGTECAVCLDEIENEQPARLVPGCNHGFHVECADTWLSKNPLCPVCRAKLDPQLFTHQSQC 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc8g00041 127 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 119 IPR013083 -
Stsc8g00041 127 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Stsc8g00041 127 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Stsc8g00041 127 Pfam Ring finger domain 70 113 IPR001841 -
Stsc8g00041 127 SMART ring_2 71 112 IPR001841 -
Stsc8g00041 127 SUPERFAMILY RING/U-box 70 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc8g00041 Stsc-Chr8 222979 223362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc8g00041 1 120 C3H Transcription Factor Family AT5G42200 57.143 6.17e-46 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc8g00041 K19037 - gmx:100811160 230.335