Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc8g00030 ATGGTGACGGATTATTCGAAATCCGACACCGTGGTGTACCTCCATGGCGACCTCGATCTTCGGATCATTGAGGCTCGCCATCTTCCCAACATGGACATGCTTTCAGAGCGCTTGCGCAGATTCTTCTCTGCTCTAAACACCTGCACCGGCTCCATCACCGGAAGGAAGAAGAACGGGAAGAGCCACCGCCACAGAAAGATCATCACCAGCGATCCTTACGTAACCGTTTGCCTCGCTGGCGCCACCGTGGCTCGAACCCGCGTCATTGCTAACTCTCAGAATCCTACTTGGAACGAGCATTTCAAAATCCCTCTGGCTCACCCGGCCACGGAGCTAGAGTTCTACGTCAAAGATAACGACATGTTCGGCGCAGACTTGATCGGAATCGCATTCGTCTCCGCGGATAAGATCTTAACCGGCGAAACCCTCAGCGGCTGGTTCCCGATCATCGGCACCTCCGGTAGGCCACCGAAACCTAATTGCGCGGTTCTGCTCGAGATGAAATTCAAGAAATGCGAGGATTCTCCTTTGTACAGATCCAGCATTGCACCCGAACCTGATCGGTTCGCGGTTCGTGATACGTATTTTCCAGTTCGGCACGGAGGTTCGGTGACGCTGTACCAGGACGCGCACGTGCCGGATGGGATGCTGCCAGAGATTGGATTGGATGATGGAGTTGCGTTTCAGCAAGGTAAGTGCTGGGAAGATATCTGCCATGCGATCTTGGAGGCCCATCATTTGGTATACGTTGTGGGCTGGTCCATTTATGATAAGGTGAAGCTCGTTAGAGAGCCCACTAAGCCCTTACCTAGCGGTGGAGATTTGAGCCTTGGTGAGTTGCTCAAGTACAAGTCTCAAGAAGGCGTTAGAGTCCTCATGTTGGTCTGGGATGACAAAACTTCGCACAATAAATTCTTCATTCACACGGTTGTTGGAACACTCTTCACGCATCATCAAAAATGTGTAATAGTTGATACTCAAGGACAGGGCAACCATAGAAAGATAACCGCATTTATAGGTGGTCTTGATCTTTGTGACGGGCGATATGATACACCTGAGCACAGGATTGTCCGAGATCTTGACACCGTTTTTCAGAATGATCATCATAATCCCACATTTCCTGCAGGAATCAAGTGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAGGGTCCTGGTGTGTATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCCAATAGATGGACCGAGTTGGGGAAGAAAATCAAGAGAGTATCAAAGTGGCAAGATGATTCTCTCATCAAGTTAGAACGCATCTCTTGGATTCTCAGTCCTTCTGAGTCAGTTCCAAATGATCATCCTGACTTATGGGTTTGCCAGGAAGATGACCCTCAAAGCTGGAACATTCAGATTTTTCGATCTATTGACTCTGGCTCAGTGAAAGGATTTCCTAAGAATGTACTCGAAGCTGAGGCTCAGAACCTCGTTTGTGCAAAAAATTTGGTGATTGACAAGAGTATTCAGACAGCATACATACATGCAATAAGATCTGCTCGAAATTTTATTTACATCGAGAATCAATATTTCATCGGATCGTCGTTTGCATGGCCATCCTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATGGAGTTGGCACTGAAGATAGTTAGTAAGATTAGAGCCAAGGAGAGATTCACAGTTTATATTGTGATCCCAATGTTTCCTGAAGGTGTGCCTTCTTCAGTCGCAATGCAAGAGATTCTGTTTTGGCAGGGACAAACTATGCAGATGATGTATGAAATCATAGCTCGGGAGTTAAAAGCTGCAAACATTGAAAACAGCCACCCCCGAGACTACCTAAACTTTTACTGTCTTGGAACCAGGGAGGATTTCACTGAAGTTCCACATTCACTTGCTTCTTCATTTTCAAATGGTGGCGAAACAGTTGCATCTTCCAAGTACAATCGTTTTATGGTTTATGTACATGCGAAAGGAATGGTTGTGGATGATGAATATGTTATAGTTGGATCAGCCAACATTAATCAACGATCAATGGCTGGATCAAGAGACACAGAGATCGCAATGGGTGCATATCAACCCCATCATACATGGGGCAAGAAACAGAGACATCCACACGGTCATGTATATGGATACAGAATGTCTTTATGGGCAGAACACATGGGTTACGTAGATGAATGCTTCAAGGAGCCTGAAACCTTGGAATGTGTCCAAACTGTGAACAAGATTGCTGAAGATAACTGGAATAAGTATACAGCTGATTCTTACGCACCATTACAAGGGTACCTCATGAGATACCCTATAAGAGTAGATGCAAATGGCAAGGTCAGCTCCTTACCAGGTTTTGAGACTTTTCCAGATGTTGGTGGCAAAGTACTTGGCTCACGCACAACCCTTCCCTCTGCTCTAACCACATAG 2433 0.4595 MVTDYSKSDTVVYLHGDLDLRIIEARHLPNMDMLSERLRRFFSALNTCTGSITGRKKNGKSHRHRKIITSDPYVTVCLAGATVARTRVIANSQNPTWNEHFKIPLAHPATELEFYVKDNDMFGADLIGIAFVSADKILTGETLSGWFPIIGTSGRPPKPNCAVLLEMKFKKCEDSPLYRSSIAPEPDRFAVRDTYFPVRHGGSVTLYQDAHVPDGMLPEIGLDDGVAFQQGKCWEDICHAILEAHHLVYVVGWSIYDKVKLVREPTKPLPSGGDLSLGELLKYKSQEGVRVLMLVWDDKTSHNKFFIHTVVGTLFTHHQKCVIVDTQGQGNHRKITAFIGGLDLCDGRYDTPEHRIVRDLDTVFQNDHHNPTFPAGIKCPRQPWHDLHCKIEGPGVYDILTNFEQRWRKANRWTELGKKIKRVSKWQDDSLIKLERISWILSPSESVPNDHPDLWVCQEDDPQSWNIQIFRSIDSGSVKGFPKNVLEAEAQNLVCAKNLVIDKSIQTAYIHAIRSARNFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRAKERFTVYIVIPMFPEGVPSSVAMQEILFWQGQTMQMMYEIIARELKAANIENSHPRDYLNFYCLGTREDFTEVPHSLASSFSNGGETVASSKYNRFMVYVHAKGMVVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKQRHPHGHVYGYRMSLWAEHMGYVDECFKEPETLECVQTVNKIAEDNWNKYTADSYAPLQGYLMRYPIRVDANGKVSSLPGFETFPDVGGKVLGSRTTLPSALTT 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc8g00030 810 Gene3D Endonuclease Chain A 226 433 - -
Stsc8g00030 810 SUPERFAMILY Phospholipase D/nuclease 193 414 - -
Stsc8g00030 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 656 683 IPR001736 GO:0003824
Stsc8g00030 810 PANTHER PHOSPHOLIPASE D 307 801 IPR015679 -
Stsc8g00030 810 SMART pld_4 313 348 IPR001736 GO:0003824
Stsc8g00030 810 SMART pld_4 656 683 IPR001736 GO:0003824
Stsc8g00030 810 Pfam PLD-like domain 574 692 IPR025202 -
Stsc8g00030 810 PIRSF PLD_plant 3 310 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc8g00030 810 PIRSF PLD_plant 304 810 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc8g00030 810 ProSiteProfiles C2 domain profile. 1 147 IPR000008 -
Stsc8g00030 810 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 313 348 IPR001736 GO:0003824
Stsc8g00030 810 Pfam Phospholipase D C terminal 730 800 IPR024632 -
Stsc8g00030 810 Gene3D C2 domain 15 177 IPR035892 -
Stsc8g00030 810 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 170 IPR035892 -
Stsc8g00030 810 CDD C2_plant_PLD 11 169 - -
Stsc8g00030 810 Gene3D Endonuclease Chain A 478 703 - -
Stsc8g00030 810 SUPERFAMILY Phospholipase D/nuclease 493 741 - -
Stsc8g00030 810 Pfam Phospholipase D Active site motif 314 348 IPR001736 GO:0003824
Stsc8g00030 810 Pfam C2 domain 16 149 IPR000008 -
Stsc8g00030 810 SMART C2_3c 17 146 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc8g00030 Stsc-Chr8 171058 175306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc8g00030 8 632 Phospholipase D Gene Family (Wang group) AT4G35790 61.233 0.0 855
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc8g00030 K01115 - gmx:100795859 1344.72