Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc8g00022 ATGCATATGGGAGATACAGAGAGTCGCAGTAGCAGAATTTGCAATCCTTGGTGGAATCAGAGTGGCCGAAAGCAGAGGCAGAAGGTTGAAGTTTACAGCGAGGTTCTTACTAGACTCAAGGAATTGAATGTCAAAGAAGCTTCAGTTCCTGGTTTTGATGATGAGCTTTGGGCTCACTTCTACTATCTTCCAACTAGGTATGCTTTGGATATGAATGTGGAGAGGGCACAAGATGTGCTCATGCATAAAAGGTTGCTTCACATGGCACGATTTCCTGCTACTGCAACTGGACCTGCAATTGAAGTTCGTCTTGTTCAGGTTCGTGCTTCTTCTGCTGCAAACTCACGAATTTGTGACACTCCTCAATATTCTGATATTCCAGCCACAATCTTCCATCCGCCCCCGGCTTTTGCTTCATCATCTAACCTTGAACTTGATCAATGCAAAAGTCAGTTACAAGCTGAAGACAAGAGTAGACATTTCAATTTTTACGCACACTACGCACGGCCAATGCATGAAATCACGATTTCAAACAATGACAAGCCAAAACTCCTCAGTCAGTTAACTTCTTTAATGTCTGAGACTGGGCTTGACATTCAAGAAGCACATGCTTTTTCCACATTGGATGGATACTCATTGGATGTTTTTGTTGTTGGTGGTTGGCCAGTTGAGGAGACAGAGAAATTAAAACGTGTACTAGCAAAGAAAATTCAAAAACTCGAGGAGCAACTGCAGTTGAAAGAAAATGGAACTATTCCTACTGCAGAGCAAGGGAACAATGGGTTCAAATTTATCTCTAGTCATGTAAATTTTGCCACTAATGGAAATGATGTCTGGGATGAAAGATGTTTGAGATGTGAAAAGAAAATTGCATCTGGATCTTTCAGTGATCTGTATAAGGGTACTTTCTGTAATCAAGATGTGGCTATCAAAGTTCTTAAGGAGGATAATTTGAATGAAAATATACAGAGGGAGTTTTATCAAGAAATCTGTATCCTAAGTAAAATTCAACATAAAAATGTTGTGAGATTTTTTGGTGCTTGTACAAAACCCCCTAACCTTTACCTTGTCACAGAATATATGTCTGGCGGAAGTATATATGACTTTCTTCATATAAAGAAGGCTGTGCTTTCTCTTCCATGGTTGCTTAGAGTTGCCATTGACGTTTCAGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGAGACCTCAAAACAGCTAATCTCTTAATGGATGATAAGGGGGTAGTTAAGGTTACTGATTTTGGGGTTGCAAGAGTGCACAATCAATCCGGTGTGATGACTGCAGAAACTGGAACTTATCGATGGATGGCTCCGGAGGTGATTGAGCATAAGCCATATGATCACAAAGCAGATGTTTATAGTTTTGGCATTGTCCTTTGGGAGCTTCTTACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTCCAAAAGGGTTTGAGGCCAAAAATTCCAAGGCATACTCATCCAATGTTGGTGGAATTACTCAACCGGTGCTGGCACCAAGATCCATCTTCGAGACCCAATTTCTCAGAAATTCTGGAATTTCTGTTGCACATGACCATAAAGGTTGCTGGGAAAGGTGATGGTAATTAA 1644 0.4063 MHMGDTESRSSRICNPWWNQSGRKQRQKVEVYSEVLTRLKELNVKEASVPGFDDELWAHFYYLPTRYALDMNVERAQDVLMHKRLLHMARFPATATGPAIEVRLVQVRASSAANSRICDTPQYSDIPATIFHPPPAFASSSNLELDQCKSQLQAEDKSRHFNFYAHYARPMHEITISNNDKPKLLSQLTSLMSETGLDIQEAHAFSTLDGYSLDVFVVGGWPVEETEKLKRVLAKKIQKLEEQLQLKENGTIPTAEQGNNGFKFISSHVNFATNGNDVWDERCLRCEKKIASGSFSDLYKGTFCNQDVAIKVLKEDNLNENIQREFYQEICILSKIQHKNVVRFFGACTKPPNLYLVTEYMSGGSIYDFLHIKKAVLSLPWLLRVAIDVSEGMKYLHQNNIIHRDLKTANLLMDDKGVVKVTDFGVARVHNQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGKLPYEHLSPLQAAVGVVQKGLRPKIPRHTHPMLVELLNRCWHQDPSSRPNFSEILEFLLHMTIKVAGKGDGN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc8g00022 547 PRINTS Tyrosine kinase catalytic domain signature 504 526 IPR001245 GO:0004672|GO:0006468
Stsc8g00022 547 PRINTS Tyrosine kinase catalytic domain signature 441 451 IPR001245 GO:0004672|GO:0006468
Stsc8g00022 547 PRINTS Tyrosine kinase catalytic domain signature 358 371 IPR001245 GO:0004672|GO:0006468
Stsc8g00022 547 PRINTS Tyrosine kinase catalytic domain signature 460 482 IPR001245 GO:0004672|GO:0006468
Stsc8g00022 547 PRINTS Tyrosine kinase catalytic domain signature 395 413 IPR001245 GO:0004672|GO:0006468
Stsc8g00022 547 SUPERFAMILY ACT-like 171 247 IPR045865 -
Stsc8g00022 547 Pfam Protein tyrosine and serine/threonine kinase 285 533 IPR001245 GO:0004672|GO:0006468
Stsc8g00022 547 SUPERFAMILY Protein kinase-like (PK-like) 279 533 IPR011009 -
Stsc8g00022 547 Gene3D Transferase(Phosphotransferase) domain 1 363 543 - -
Stsc8g00022 547 CDD STKc_MAP3K-like 290 533 - -
Stsc8g00022 547 Coils Coil 223 250 - -
Stsc8g00022 547 Gene3D Phosphorylase Kinase; domain 1 280 362 - -
Stsc8g00022 547 ProSiteProfiles ACT domain profile. 173 253 IPR002912 -
Stsc8g00022 547 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 164 533 - -
Stsc8g00022 547 SMART serkin_6 284 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc8g00022 547 ProSiteProfiles Protein kinase domain profile. 284 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc8g00022 547 FunFam Serine/threonine-protein kinase isoform 1 278 362 - -
Stsc8g00022 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 401 413 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc8g00022 Stsc-Chr8 113488 117458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc8g00022 20 541 MAP Kinase Kinase Kinase AT4G35780 57.358 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc8g00022 PK_Tyr_Ser-Thr 4.2e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc8g00022 - - gmx:100818047 769.615