Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc8g00021 ATGTCCTCTTCTTCGGCGGCGAGAACCACCGTTGGTAACGAGGAGGAAGGGAAGCTCTACCCTTCCCCACTAGCCTCTCACGACGACGTAGTCAAGGACCCTGCTGTCTTTTGGGACACTCTCAGGCGCTTTCACCTTCGTCTGGGTACCAAATTTATGATTCCTGTGATTGGAGGGAAGGAGCTTGATTTGCACGTCCTCTACGTGGAGGTTACGAGGAGAAGTGGTTATGAGAAGGTAGTTGCAGAGAAGAAATGGAGGGAAGTTGGAACTGTATTCAATTTCTCAGCGACCACAACGAGTGCTTCTTTTGTGCTCAGGAAACACTACCGCAACCTTCTTTACCATTACGAACAAGTTCACTTCTTTAATGTTAAGGGTCCTCTCTACACACCATCAGCAGATTCATTTTCTGGCAGCAAGCACTCTTGGAGATCTGAGCTGGCTATTGTTGAATATTCTCCCAAGCCAATGAACCATACTAAAGGTTCCCACCCTCAAGACACTTCATCAAGTCTTACAGGGAAGGGAACAATAGAGGGAAAAATTGAGTGTGGCTATTTAGTGTCAGTGAAAGTGGGTTCAGAGGTTCTAAGAGGAGTGCTATACCATCCAGAGCAACTTGTTCCTCCCCCAACTGTTCCACAAAGTAGCAATGCCATTGTACCCTACGGCTACAAACCTCGCTATTCCGGCGGCCGGAGGAGGAGGAACAAGAGAAAGTGGGACCCGAATTACCCGAAGCCAAACAGGAGTGGCTATAACTTCTTCTTTGCTGAGAAGCATTACAAGCTCAAGTCACTCTATCCAAACAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCTTGGAATAGTCTCAGCCCAGAAGAAAGAATGGTTTACCAGAACATTGGCTTAAGAGACAAAGAAAGGTACAAGAGGGAGGTGAAGGAGTACAAAGAAAAGATGAAGATTATGCAAAACTTAGAAGTTGGGACGCCCAGAAATCTCAATGGTTCTGCTCTTAATGGTAGCTAA 1020 0.4637 MSSSSAARTTVGNEEEGKLYPSPLASHDDVVKDPAVFWDTLRRFHLRLGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGTVFNFSATTTSASFVLRKHYRNLLYHYEQVHFFNVKGPLYTPSADSFSGSKHSWRSELAIVEYSPKPMNHTKGSHPQDTSSSLTGKGTIEGKIECGYLVSVKVGSEVLRGVLYHPEQLVPPPTVPQSSNAIVPYGYKPRYSGGRRRRNKRKWDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVYQNIGLRDKERYKREVKEYKEKMKIMQNLEVGTPRNLNGSALNGS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc8g00021 339 Pfam HMG (high mobility group) box 247 314 IPR009071 -
Stsc8g00021 339 SUPERFAMILY ARID-like 27 127 IPR036431 GO:0003677
Stsc8g00021 339 MobiDBLite consensus disorder prediction 1 20 - -
Stsc8g00021 339 MobiDBLite consensus disorder prediction 212 247 - -
Stsc8g00021 339 Gene3D - 24 128 IPR036431 GO:0003677
Stsc8g00021 339 SMART bright_3 32 123 IPR001606 GO:0003677
Stsc8g00021 339 Coils Coil 303 323 - -
Stsc8g00021 339 ProSiteProfiles ARID domain profile. 31 122 IPR001606 GO:0003677
Stsc8g00021 339 CDD HMG-box_AtHMGB9-like 247 313 - -
Stsc8g00021 339 SMART hmgende2 246 315 IPR009071 -
Stsc8g00021 339 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 323 - -
Stsc8g00021 339 Pfam ARID/BRIGHT DNA binding domain 37 118 IPR001606 GO:0003677
Stsc8g00021 339 CDD ARID_HMGB9-like 33 118 IPR045303 GO:0003677
Stsc8g00021 339 SMART ARID_2 28 118 - -
Stsc8g00021 339 SUPERFAMILY HMG-box 244 317 IPR036910 -
Stsc8g00021 339 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 247 314 IPR009071 -
Stsc8g00021 339 Gene3D High mobility group box domain 231 327 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc8g00021 Stsc-Chr8 110139 112214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc8g00021 18 319 ARID Transcription Factor Family AT1G76110 65.909 1.83e-133 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc8g00021 ARID 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc8g00021 - - adu:107460270 570.081