Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc89g00012 ATGGGTCTGAAACTCATATGGGTACCCTCCATTTTCATCATTTCCTTGTTCCTTAGTGCTAATTCAGAAGAACAAGCGGTGAAGAAGGCCTTGGTGCTGTTCATGAAAAAGCTTGCACCAGATAATAATGCACAGAGAGGTTCCAACAACTGGGGTTGGAACCTCACATCAGATCCATGCACTGATCATTGGCACGGTGTGACTTGTCATTCAGACAACAAAACCGTGATGAGCATAGTTGTCGAACACTCAAATCTGAAAGGTGTTCTAGATGCTTCTTCTCTTTCCATGGCCAAGTCTCTCATGCTGCTTAGCCTTAAAAACAATAGTCTCCATGATTCTGTTTCTGAAGACATAGGGAACTTGAAGTCCCTTACTCTTCTCTATCTAAATGGTAACCGCTTCTCAGGGAAGCTTCCGGTCTCTATTGGGAATTTACCCAACTTGATGAGGCTTGACGTTTCGGATAACAACTTCTCCGGCGAGATTCCGGAAGAAATGTCCGGCCTTTCGCAGTTGAAATCTTTTCTTGCAGAGAACAACAACTTCACCGGAAGTATTCCTAATTTTGAGTTGTCAAGACTTCAGTTCTTTAATGTCTCAAACAATAACTTACATGGTCATATTCCGGATGATGGAGGGAAATTCTTTCCAGATAGCTTTTATGGTAATCCTGGTTTGTGTGGAAAGCCACTTGCCAATGCTTGTCCACCTGCACCTGCACCTGCACCTGAACCTCCTCTTCCTCAGCCCCGGCCCCGGCCGCCTCCAAATTCATCAAACCACCACAATAGTGTGTCCCTTTATTTAGGGTACATAATTCTTTGTTTCTTGGTGTTGGTTTTCTTGGTGCTAACATTGGTTGGAAAATTCAAAACAAAGGACAGAGCAATGGATGGAAAAGAAAAGACAGAGAAGCTAAAAGCAGAGGACAAGGCTAGTGAAGCTTATTACAATTCAAGTGGATCAAAGAGTGGAATAGTTGGAATGAGATCAGAGAGTTCAATTTCATCACTGGAAAGCGGCGTGGCCTCGCCGTCTGGTCTTGTGGTGCTCTCAAGCGCGGAGTATAAGGCGCTGCGATTCGAGGACTTGCTCGGTGCTCCGGCGGAGTTGGTTAGGAGAGGGAAGAATGGAAGCCTCTACAAGGTGATGATGGATAATGGAGTGGTTTTGGCAGTGAAAAGAGTGAAGGATTGTGGGATTTCAAAGCAAGATTTTCAGAGAAGGATGGAGATGATAGCAAAAGTGAAGCATCCAAGAGTGCTTCCACCTCTTGCATATTATTGCTCTCATCAAGAGAAGCTCCTTGTCCATGAATATATGCACAATGGAAGTCTCTTCATGTTGCTTTATGGAGGATCCCAAAGTGGCGGGCGGCACCACTCTTTTGGTTGGCGGAGCAGGCTTAACATGGCGGCGAACACGGCGGCAGCATTGGCACACATGCATGAGAATCTGAGAGGAGAGAGTGGAGTATCATCACACGGTAACTTGAAATCAAGCAACATCTTATTTGACAACAACATGAATCCATTGATAAGTGAATATGGCCTCCCAGTGGCCGAAAACAATCAAGAAAGCAGCATGATGAGAAACGGCGTGAAAGGTGACATCTACGCCTTCGGTGTGATACTCCTTGAGTTGCTAACAGGAAAAGTGGTTACAAATGATGGGTTTGGTGATGATTTGGCCAAATGGGTAAACTCGGTGGTGAGAGAGGAATGGACGGTTGAAGTTTTTGATAAGTCATTAATCAGAGAAGGTGCATCTGAAGAGAGGATGATGAGTTTGTTGCAGGTAGCCTTGAATTGCATCACTTCTTCTCCAAATGATAGGCCAAGTATGGATCAGGTTGCAATGGTTATAAGATCTTTGAAAGAAGATGAAGAAAAATCAGTGTCCTTCTGA 1911 0.4448 MGLKLIWVPSIFIISLFLSANSEEQAVKKALVLFMKKLAPDNNAQRGSNNWGWNLTSDPCTDHWHGVTCHSDNKTVMSIVVEHSNLKGVLDASSLSMAKSLMLLSLKNNSLHDSVSEDIGNLKSLTLLYLNGNRFSGKLPVSIGNLPNLMRLDVSDNNFSGEIPEEMSGLSQLKSFLAENNNFTGSIPNFELSRLQFFNVSNNNLHGHIPDDGGKFFPDSFYGNPGLCGKPLANACPPAPAPAPEPPLPQPRPRPPPNSSNHHNSVSLYLGYIILCFLVLVFLVLTLVGKFKTKDRAMDGKEKTEKLKAEDKASEAYYNSSGSKSGIVGMRSESSISSLESGVASPSGLVVLSSAEYKALRFEDLLGAPAELVRRGKNGSLYKVMMDNGVVLAVKRVKDCGISKQDFQRRMEMIAKVKHPRVLPPLAYYCSHQEKLLVHEYMHNGSLFMLLYGGSQSGGRHHSFGWRSRLNMAANTAAALAHMHENLRGESGVSSHGNLKSSNILFDNNMNPLISEYGLPVAENNQESSMMRNGVKGDIYAFGVILLELLTGKVVTNDGFGDDLAKWVNSVVREEWTVEVFDKSLIREGASEERMMSLLQVALNCITSSPNDRPSMDQVAMVIRSLKEDEEKSVSF 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc89g00012 636 SUPERFAMILY Protein kinase-like (PK-like) 371 621 IPR011009 -
Stsc89g00012 636 Gene3D Ribonuclease Inhibitor 25 190 IPR032675 -
Stsc89g00012 636 Gene3D Ribonuclease Inhibitor 191 239 IPR032675 -
Stsc89g00012 636 Pfam Protein kinase domain 375 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc89g00012 636 MobiDBLite consensus disorder prediction 298 313 - -
Stsc89g00012 636 Gene3D Phosphorylase Kinase; domain 1 358 441 - -
Stsc89g00012 636 PANTHER OS05G0588300 PROTEIN 10 628 - -
Stsc89g00012 636 ProSiteProfiles Protein kinase domain profile. 367 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc89g00012 636 MobiDBLite consensus disorder prediction 238 258 - -
Stsc89g00012 636 Gene3D Transferase(Phosphotransferase) domain 1 442 635 - -
Stsc89g00012 636 MobiDBLite consensus disorder prediction 238 261 - -
Stsc89g00012 636 FunFam Nuclear pore complex protein NUP107 24 189 - -
Stsc89g00012 636 MobiDBLite consensus disorder prediction 298 319 - -
Stsc89g00012 636 SUPERFAMILY L domain-like 52 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc89g00012 Stsc-Chr89 108056 111502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc89g00012 37 627 Receptor kinase-like Gene Family AT1G68400 35.350 1.69e-100 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc89g00012 Pkinase 1.8e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc89g00012 - - gmx:100787974 664.84