Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc89g00003 ATGGTGGCAAGATCATACGCCAATTTGTTGGACTTAGCTTCAGGGGATATTTTAAATACCCCTCAAACTCCAAGAGCACTTCCGCGAGTTATGACTGTTCCCGGAGTTATCTCTGATGTAGAAAGCAAGCAAAGCAGTGAGGATGGTTTCCAGTCAGATCAGCGTCAGAAGATAATTATTGTAGCAAATTTTCTTCCTCTCAATGCTAGCAAGGACAAGTCTTCTGGAAAATGGAGCTTCAGCTATGACAAGGATTCAATATTTTGGCAGTTAAAAGATGGTCTCCCTCCTGATGTTGATGTTGTTTATGTGGGATCTCTGATGGTTGATGTTGATGCTGGTGAGCAAGAGCAAGTTTCTAATCAGTTGCTGGAGGAATTCAAATGTGTTCCTGCTTTTCTTCCTCCGGAAATCGAGGAACAGTTCTATAATGGATTCTGCAAGCAACATTTATGGCCTCTATTCCATTACATGTTGCCAATGTATCCGGGTTATAGCAATCGCTTTGATAGGACACTGTGGCAAGCTTATGTTTCGGCCAATAAGATATTTGCAAATAAAGTCACTGAGGTCATTAACCCGGACATAGATTATGTATGGGTTCATGATTACCAATTAATGGTTCTACCGACATTTCTGCGAAAGCGTTACAGCAGGATCAAGCTTGGTTTCTTCTTGCATAGTCCCTTTCCTTCATCTGAGATTTATCGAACCCTGCCAGTCAGAGGTGAAATTTTGAAATCTCTGCTGAATGCAGATTTAATTGGTTTTCACACATTTGATTATGCTCGCCATTTTCTCTCCTGCTGCAGTCGAATGCTTGGTTTAGAATATGAATCCAAAAGAGGCTACATTGGGCTCGAGTATTTCGGCCGTACAATATACATCAAAATATTGCCTGCTGGGATTCATATGGGCAGACTTCAATCTGTGTTAGATAACTCTTCTTCTACTGCCAAAGCAAGAGAAATCTGTGAGCAATTTAAGGGGAAGCGGCTTATAGTTGGTGTCGACGATATGGACATCTTTAAAGGTATAAGTTTAAAGCTCTTGGCCCTTGAACAACTGTTAGAGGAATATCCAACACTACGGGGTGAATTGATTATGGTCCAAATCTTGAATCCACTGAGGGGTTCTAGCAAAGATATTGAGGATGCAAAGGAGGAGGCATACATCACAGCTAACAGGATAAATGAAAGGTTTGGTTTTCCAGGCTATGAACCTGTTATCATCATTGATCGCCATGTTCCTTTCTATGAGAAGGCAGCCTATTATGCTATGGCAGAATGTTGCATTGTGAATGCGTTGCGGGACGGAATGAACTTGGTTCCATACAAGTACATTGTCTGTAGGCAGGGAAGTCCCCAAATGGATGAAGCTTTGGGAATCGACCATGACTCTCCGCGGACTAGTGCACTTGTTGTTTCTGAGTTTATAGGTTGCTCCCCATCTCTCAGTGGAGCAATCAGGGTGAATCCGTGGGACATTAGCGCCGTAGCCAATGCTCTGTATTTAGCCATCACTATGCCTGATGATGAGAAGAAGTTGCGACACAAGAAGCACTATCGATATGTTAGTTCTCATGATGTGGCTTACTGGGCCAAAAGTTTTGAACAAGATCTTGTGATGTCGTGTAAGGATCACCGTAATAAAAACCGCTGGGGCCTTGGCTTTGGCCTGAATTATCGGGTCTTGTCTCTTTCTCCCGATTTCAGGAAGCTGTCAAATGACCACATTGTCTCTGCCTATAAAAGGACAAAGCATAGAGCAATCTTTTTGGATTATGATGGAACAGTTGTACCTCAATCTTCCATTGATAAATCCCCCAGTCCTCGGGTTATATCCGTGCTGAACGATCTTTGCAGTGATCCTAACAATACAGTGTTTATAGTCAGTGGCCGGGGAAAAACCTCATTGGGTGAATGGTTTGATCAATGTAAGAGTCTTGGTATTGCGGCCGAGCATGGTTATTTTATCAGGTGGGGTAACCAGTCAAGCTGGCAAATGAGTCACATAAGTACAGATTTTGCTTGGAAAAAGATTGCTGAACCTGTGATGAGATCGTATACCGAAGCCACAGACGGCTCCTATATAGAGACCAAAGAGAGTGCCTTGGTGTGGCATTACTATGATGCAGACCCCAATTTCGGATCTTGGCAAGCCATCGAGCTTTTGGATCACCTGGAGAGTGTTCTTGCAAATGAGCCTGTGGTTGTTAAGAAGGGACAGCACATTGTTGAAGTCATGCTTCAGGGAATTACTAAAGGGCTAGTTGCGCAAGACGTTTTGTCTACGCTAGCCAGTGCTGGGAAATCCCCAGAATTTGTGCTGTGCATTGGGGATGACAGATCCGACGAGGACATGTTCGAGAGCATATTAACTAAATCTTATAACGCAAACACCTCCGCAGCACCAGAAATCTTTGCGTGTACCGTTGGGCAGAAACCGAGCAAGGCAAGGTACTACCTAGATGATACCATCGAGGTGACAATGCTACTTAAAGCTCTTAGTACTGCTTCAGAGCTTCTAACAACACTTTCTGCAAACGCTCCTCCTCAAAATGCAGAATCTTGCTTTGAGAATATTGGTTGA 2592 0.4336 MVARSYANLLDLASGDILNTPQTPRALPRVMTVPGVISDVESKQSSEDGFQSDQRQKIIIVANFLPLNASKDKSSGKWSFSYDKDSIFWQLKDGLPPDVDVVYVGSLMVDVDAGEQEQVSNQLLEEFKCVPAFLPPEIEEQFYNGFCKQHLWPLFHYMLPMYPGYSNRFDRTLWQAYVSANKIFANKVTEVINPDIDYVWVHDYQLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRGEILKSLLNADLIGFHTFDYARHFLSCCSRMLGLEYESKRGYIGLEYFGRTIYIKILPAGIHMGRLQSVLDNSSSTAKAREICEQFKGKRLIVGVDDMDIFKGISLKLLALEQLLEEYPTLRGELIMVQILNPLRGSSKDIEDAKEEAYITANRINERFGFPGYEPVIIIDRHVPFYEKAAYYAMAECCIVNALRDGMNLVPYKYIVCRQGSPQMDEALGIDHDSPRTSALVVSEFIGCSPSLSGAIRVNPWDISAVANALYLAITMPDDEKKLRHKKHYRYVSSHDVAYWAKSFEQDLVMSCKDHRNKNRWGLGFGLNYRVLSLSPDFRKLSNDHIVSAYKRTKHRAIFLDYDGTVVPQSSIDKSPSPRVISVLNDLCSDPNNTVFIVSGRGKTSLGEWFDQCKSLGIAAEHGYFIRWGNQSSWQMSHISTDFAWKKIAEPVMRSYTEATDGSYIETKESALVWHYYDADPNFGSWQAIELLDHLESVLANEPVVVKKGQHIVEVMLQGITKGLVAQDVLSTLASAGKSPEFVLCIGDDRSDEDMFESILTKSYNANTSAAPEIFACTVGQKPSKARYYLDDTIEVTMLLKALSTASELLTTLSANAPPQNAESCFENIG 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc89g00003 863 NCBIfam trehalose-phosphatase 587 836 IPR003337 GO:0003824|GO:0005992
Stsc89g00003 863 Gene3D - 671 751 - -
Stsc89g00003 863 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 57 541 - -
Stsc89g00003 863 NCBIfam HAD-IIB family hydrolase 590 791 IPR006379 -
Stsc89g00003 863 Gene3D Glycogen Phosphorylase B; 311 526 - -
Stsc89g00003 863 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 718 848 - -
Stsc89g00003 863 SUPERFAMILY HAD-like 589 836 IPR036412 -
Stsc89g00003 863 Gene3D Glycogen Phosphorylase B; 49 310 - -
Stsc89g00003 863 FunFam Trehalose-6-phosphate synthase 2 672 751 - -
Stsc89g00003 863 FunFam Alpha,alpha-trehalose-phosphate synthase 311 526 - -
Stsc89g00003 863 Pfam Trehalose-phosphatase 592 826 IPR003337 GO:0003824|GO:0005992
Stsc89g00003 863 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 50 309 - -
Stsc89g00003 863 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 28 837 IPR001830 GO:0003824|GO:0005992
Stsc89g00003 863 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 588 705 - -
Stsc89g00003 863 CDD GT20_TPS 57 541 IPR001830 GO:0003824|GO:0005992
Stsc89g00003 863 CDD HAD_TPP 590 829 - -
Stsc89g00003 863 Gene3D - 591 823 IPR023214 -
Stsc89g00003 863 Pfam Glycosyltransferase family 20 57 541 IPR001830 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc89g00003 Stsc-Chr89 42471 45829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc89g00003 1 840 Trehalose Biosynthesis Gene Families AT1G23870 67.101 0.0 1217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc89g00003 K16055 - gmx:100812031 1355.5