Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc89g00002 ATGAACATTTCAAGGTTGCTCTTCACATTCTCCGCTACCTCAAGCAAGCCCCATCAAAAGGCATCTTGTTTGAATGCAGCTCTGATTTTCAATGATTCTGACTGGGGAACTTGTCCTGACACTCGAAGATCCGTGTCAGGAGAGCAAATAGCAGATGTTTTAACTAAATCTTTATCTCTAGGACTGTTTCAAGCTCTATGTGTTCGCCCTGCACGTCGCACACTGCACGCAATTATCCAAATCGTTGCCAATTCCAACATTCATTCATACTGCACCATCAACATTCAAAAAATAATGACTCCTAATCATCCCCATCCCAACCCCAACCCCAACCCCAATCCCAGACCACCACCAGCCAATCCCCGTCGTCCCCTATCACTCCCGGCGGTGCACCCCTCCGACAACATCTCTCCTGCCACACTCCTCTCCTCCCTCCTCACCCTCTCCCAATCCATCCTCAACACCACCACCTTCTTCACCCAACGTCGCAACGCCCGTGAAGCCACGCGCCAAGTCTCCCTCCTCCTCATCTTCCTCCAACACCTCCACGCTTCCCTCCTCCCAAACGACGCCGTTCCCTCCCTCTCCGACCTCCACTTCTCCTTACAAAACCTTCTCTTCCTTTTACAGGATTGCTCCCGCGAAGGCGCCCGCCTCTTCATGCTTCTCAAGTCCCGCCACGTGGCATCCCAATTCCGGTCACTCTTTCGCACTATCTCTGACGCCCTCGACAAGCTGCCCCTCAACGTCATCAAAGTTTGTTGGGAAGTTAGAGAGTTAGTTGAGTTAGTTAGGAAACAAGCCAGGAAAGTCACCTTCGAGCTCGATCCGGAAGACCAAACCGAAGCCCAACGAGTTTACTCGGTTTTGCAGCAGTTCGAGCGAGGAACCGAGCCAGATTTAAACGCCATGAAGCGAACCCTCACCTACCTCGAAATCAAGACATGGATTGATTGCAAAAGAGAGGTGAAGTTTCTAGAAGACGTGATGCTCTCTTCCGCGTCCTCTGTTTCCGACGATGAAGAGGCTTCCTTGTTGAGCGGTTTGATTTCGTTCCTGTGTTACTGCAGAGGAGTGATATTTGAACACGTTGATTTCGCGTCCCTTCATGGAAATTCCCAATCCGAAGGAAGGAGCAGTGGTGGCGGCAGCGAAGTGTTGAGCTGCGAGAGGCGGCCGCCGGAGGATTTCCGGTGTCCAATCTCGTTGGAGTTGATGACTGATCCTGTCACTACTTCCACCGGCCAGACTTATGATCGCACCTCGATTCAGAAATGGCTTAAAGCAGGAAACAGTGTGTGTCCCAAAACAGGGGAGAGGCTGACCAACAGAGAGTTGGTTCCAAACACGACACTCAAAAGGCTCATCCAACAGTTCTGCGTTGATAATGGCATCTCGGTGGCGAAGCCAAGCATCCGGAGTCACCACCGTAGTGGAGCATCGGCTGAGGCTGGTAGTCCAGCCGCAGCCCACGCCATACAGTTCCTCTGCTGGTTTCTTGCCCGTAGACTCGCGTTTGGAACAGAGGAGCAACAAAACAAGGCTGCTTATGAGGTTCGCCTGCTCGCGAGGTCCAACGTTTTCAACCGGTCATGTTTGGTGGAGGTTGGGACGGTGCCGCCTTTGATTGATCTTGTTAGCACCGGTGGCAGAACAGTGCAAGAGAATGCAATGGCTGCATTGTTGAAGCTCTCGAAGCATAGCAGTGGCCAGCAATGTATAATGGAAAGCAGGGGTTTGGCGCCAATTCTCAAAGTACTAAATAGAGGGCTTAGTTTCCAAGCTCGCCAAATCGCAGCTGCTATTATATTCTATCTTTGTTCCAAGAAAGAATTTAGAAAAATCATTGGAGATAATCCGGAGGCTATTCCGGGTTTGGTGGAGATGATCAAAGAAGAAGGAACAGACAATTCTATAATGTGTGGGAAAAAGAACGCGGTGGTAGCGGTTTTCGGGCTGCTCTTACATCCCGAGAATCATTCAAAAGTGCTGGCAGCCGGAGCCGTTCCTGCAATTGTTAGGGTGTTATCTTCTTCCATGGATAATGCTAGTCTTGTCACGGATTGCCTAGCTGTTCTAGCCGCATTGGCGGAGACAACCGAGGGAGCAACCGCGGTGTTACAAGCCGAGGCATTGCATATGATCATTTGGTTCTTGCAATCCGAAACTTCGCCAGTCGTGAAGGAGCATTGCGTCTCGATTTTGATGTCTCTTTGTGTCCATGGTGGTTCAGGCGCTGTAGCTTTTCTTGTTGAGGAATCTTCAATCATGCCTTTGCTATATTCGATCATCACTGGTGGTACCCCTCACGCAGCAAAGAAATCACGGTCACTCATCAGAGTTCTGCAGGAATTCAATGAACAAAGAACTTCTGGATTGGGGGGTTCCTCATCAATTCTGCGACAACCATTGATCCACATGAGTTAG 2427 0.5023 MNISRLLFTFSATSSKPHQKASCLNAALIFNDSDWGTCPDTRRSVSGEQIADVLTKSLSLGLFQALCVRPARRTLHAIIQIVANSNIHSYCTINIQKIMTPNHPHPNPNPNPNPRPPPANPRRPLSLPAVHPSDNISPATLLSSLLTLSQSILNTTTFFTQRRNAREATRQVSLLLIFLQHLHASLLPNDAVPSLSDLHFSLQNLLFLLQDCSREGARLFMLLKSRHVASQFRSLFRTISDALDKLPLNVIKVCWEVRELVELVRKQARKVTFELDPEDQTEAQRVYSVLQQFERGTEPDLNAMKRTLTYLEIKTWIDCKREVKFLEDVMLSSASSVSDDEEASLLSGLISFLCYCRGVIFEHVDFASLHGNSQSEGRSSGGGSEVLSCERRPPEDFRCPISLELMTDPVTTSTGQTYDRTSIQKWLKAGNSVCPKTGERLTNRELVPNTTLKRLIQQFCVDNGISVAKPSIRSHHRSGASAEAGSPAAAHAIQFLCWFLARRLAFGTEEQQNKAAYEVRLLARSNVFNRSCLVEVGTVPPLIDLVSTGGRTVQENAMAALLKLSKHSSGQQCIMESRGLAPILKVLNRGLSFQARQIAAAIIFYLCSKKEFRKIIGDNPEAIPGLVEMIKEEGTDNSIMCGKKNAVVAVFGLLLHPENHSKVLAAGAVPAIVRVLSSSMDNASLVTDCLAVLAALAETTEGATAVLQAEALHMIIWFLQSETSPVVKEHCVSILMSLCVHGGSGAVAFLVEESSIMPLLYSIITGGTPHAAKKSRSLIRVLQEFNEQRTSGLGGSSSILRQPLIHMS 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc89g00002 808 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 468 IPR013083 -
Stsc89g00002 808 ProSiteProfiles U-box domain profile. 392 466 IPR003613 GO:0004842|GO:0016567
Stsc89g00002 808 SMART Ubox_2 396 459 IPR003613 GO:0004842|GO:0016567
Stsc89g00002 808 FunFam RING-type E3 ubiquitin transferase 474 793 - -
Stsc89g00002 808 Gene3D - 472 790 IPR011989 -
Stsc89g00002 808 PANTHER U BOX DOMAIN-CONTAINING 162 782 - -
Stsc89g00002 808 MobiDBLite consensus disorder prediction 372 393 - -
Stsc89g00002 808 MobiDBLite consensus disorder prediction 103 125 - -
Stsc89g00002 808 CDD RING-Ubox_PUB 394 446 IPR045210 -
Stsc89g00002 808 FunFam RING-type E3 ubiquitin transferase 393 465 - -
Stsc89g00002 808 Pfam U-box domain 394 463 IPR003613 GO:0004842|GO:0016567
Stsc89g00002 808 MobiDBLite consensus disorder prediction 101 130 - -
Stsc89g00002 808 SUPERFAMILY ARM repeat 501 783 IPR016024 -
Stsc89g00002 808 SUPERFAMILY RING/U-box 388 467 - -
Stsc89g00002 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Stsc89g00002 808 SMART arm_5 526 566 IPR000225 GO:0005515
Stsc89g00002 808 SMART arm_5 567 608 IPR000225 GO:0005515
Stsc89g00002 808 SMART arm_5 656 698 IPR000225 GO:0005515
Stsc89g00002 808 SMART arm_5 699 740 IPR000225 GO:0005515
Stsc89g00002 808 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 667 711 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc89g00002 Stsc-Chr89 5656 14356 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc89g00002 119 791 U-box Gene Family AT1G10560 37.572 5.52e-150 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc89g00002 - - adu:107491382 1132.86